Closed Auxcy1ene closed 2 months ago
Can you please try using Kilosort4 instead? Or is there some reason you need to use Kilosort3 specifically?
I am running everything through spikeinterface and the docker image for kilosort they have is for kilosort 3. That being said this is no longer an issue anymore and I have an entirely new problem so I'll make a new issue.
I have been trying to use the docker image of kilosort3 to produce a sorter output that I can analyse for my MSci project but I keep getting the same result. Whether or not I use kilosort gui or the docker image from spike interface for kilosort3, I always end up with the same error message:
""INFO: The correct number of channels has been estimated to be 32. INFO: Other possibilities could be [40 48 50 60] Traceback (most recent call last):
File "C:\Users\sean_\anaconda3\envs\kilosort_gui\lib\site-packages\kilosort\gui\settings_box.py", line 326, in import_settings
with open(settings_file_name, 'r') as f:
FileNotFoundError : [Errno 2] No such file or directory: ''
Digital filter critical frequencies must be 0 < Wn < fs/2 (fs=5.0 -> fs/2=2.5)""
I am unsure what to do since I have not only tried to input my own raw/binary data but I have downloaded other example data from the internet and have seen the same results. Upon searching for similar errors I have not been able to find anyone in a similar situation so I hope someone here can help me fix this. Many Thanks From Sean.H