MouseLand cellpose-napari issues

MouseLand / cellpose-napari

napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

https://cellpose-napari.readthedocs.org

BSD 3-Clause "New" or "Revised" License

47 stars 22 forks source link

issues

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[bugfix] use resize_and_compute_masks in compute_masks

#57 psobolewskiPhD closed 1 month ago
1
[bug] `recompute last masks` button throws traceback

#56 psobolewskiPhD closed 1 month ago
1
[maint] Fix CI (GitHub actions workflow and tox.ini)

#55 psobolewskiPhD closed 1 month ago
7
Right click no-hold painting, ctrl+left click fast delete

#54 kephale opened 2 months ago
15
[FEATURE] Training Cellpose models in napari

#53 YitengDang opened 3 months ago
1
Cell counting

#52 ErikSkare closed 4 months ago
0
removed `net_avg` parameter from model call and widget

#51 jo-mueller opened 6 months ago
2
TypeError: eval() got an unexpected keyword argument 'net_avg'

#50 LeungKamdayjat closed 1 month ago
7
napari 4.19 cellpose installation issue

#49 danidean opened 9 months ago
1
[FEATURE] add channel_axis and z_axis to widget

#48 manerotoni opened 11 months ago
3
4D stack segmentation appears smashed at the top of the image.

#47 TroySeman closed 1 month ago
1
[Maint] Fix tox.ini (XAUTHORITY on new line) to fix tests

#46 psobolewskiPhD closed 1 year ago
1
Update README.md

#45 sebherbert closed 1 year ago
1
Cellpose model detections are not the same in Cellpose-napari plug in

#44 TroySeman closed 1 year ago
1
cellpose-napari crashes when running segmentation on Mac

#43 christinab12 closed 1 month ago
3
Cell segmentation XYZ coordinates export

#42 alfonsecard closed 1 month ago
1
`get_masks` interface changed from cellpose 1.x to 2.x

#41 aeisenbarth closed 1 month ago
3
Extend test timeouts (mostly for macOS)

#40 psobolewskiPhD closed 1 year ago
0
Remove copy-pasta error

#39 psobolewskiPhD closed 1 year ago
2
Bugfix: pass image_layer.scale to the newly created layers

#38 psobolewskiPhD closed 2 years ago
3
CellPose Napari plugin does not consider scale of original layer

#37 sebi06 closed 1 month ago
2
Napari crashes when opening images after the plugin has been opened

#36 zoccoler closed 1 month ago
2
Update test action based on latest cookiecutter and tweak tests

#35 psobolewskiPhD closed 2 years ago
14
Set `process_3D` checkbox based on image_layer.ndim

#34 psobolewskiPhD closed 1 week ago
3
Feature: Add basic progress indicator & activity info

#33 psobolewskiPhD opened 2 years ago
6
FIx Windows OpenGL test failure

#32 psobolewskiPhD closed 2 years ago
2
Check image size and set `process stack as 3D`

#31 psobolewskiPhD opened 2 years ago
1
Swap 3D sample from ZCYZ to CZYX

#30 psobolewskiPhD closed 2 years ago
2
Fix `logger` error for cellpose>0.7.2 by using `logging`

#29 psobolewskiPhD closed 2 years ago
3
Set upper bound on cellpose to 0.7.2

#28 psobolewskiPhD closed 2 years ago
7
Downloading models takes a long time with no visual indicator in napari

#27 psobolewskiPhD opened 2 years ago
5
CellPose-napari and TensorFlow

#26 samueljrosen closed 1 month ago
1
Failed to build numba opencv-python-headless

#25 emoebel closed 2 years ago
1
cellpose napari with jupyter notebook

#24 Erwan67 opened 2 years ago
0
ROI manager compatible output for ImageJ/Fiji

#23 Minarazagh closed 1 month ago
2
Exclude tests from packaged files

#22 jaimergp closed 2 years ago
0
Problem with cellpose-napari (logger import error)

#21 camcaminin9 closed 2 years ago
5
Error when trying to run segmentation

#20 edelaserna closed 2 years ago
4
Update repo for npe2 support

#19 tlambert03 closed 2 years ago
2
add categories and preview page

#18 chili-chiu closed 2 years ago
1
ResolvePackageNotFound:

#17 Taitai6521 closed 1 month ago
2
Reduce GPU mem usuage

#16 sbinnee closed 2 years ago
3
fixing CI

#15 tlambert03 closed 3 years ago
3
fixes Github URL

#14 neuromusic closed 3 years ago
0
small updates for magicgui 0.3.0

#13 tlambert03 closed 3 years ago
1
segmentation ends with `tuple index out of range`

#12 Czaki closed 2 years ago
2
Import qtpy instead of forcing PyQt5

#11 sbinnee closed 3 years ago
1
Problem running on a stack or folder of multiple images (tuple index out of range)

#10 babo989 closed 1 month ago
3
[FEATURE] Segmentation on 4D stacks

#9 rdemets opened 3 years ago
2
export/save 3D mask do not work

#8 matfallet opened 3 years ago
0