MouseLand / cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
https://www.cellpose.org/
BSD 3-Clause "New" or "Revised" License
1.24k stars 360 forks source link

[BUG]: Outliers in cell segmentation points (both for ['mask'] and ['outlines']) #887

Open postnubilaphoebus opened 3 months ago

postnubilaphoebus commented 3 months ago

Describe the bug The outlines as given by Cellpose vary in density, sometimes producing outliers. This becomes problematic when approximating the shape of the cell using the outlines. Is this behaviour intended, and what could it signify when outliers are present in the segmentation? For now, I assume rejecting these outliers is best practice.

Screenshots Screenshot from 2024-03-06 16-26-51