Describe the bug
When I ran the scripts agat_sp_add_start_and_stop.pl, it told that MSG: Each line of the file must be less than 65,536 characters. Line 28 is 85016 chars.
General (please complete the following information):
Screenshots
The process was stopped and the Blas_stdAGATstart_and_stop.gff was empty
------------- EXCEPTION -------------
MSG: Each line of the file must be less than 65,536 characters. Line 28 is 85016 chars.
STACK Bio::DB::IndexedBase::_check_linelength /home/dell/anaconda3/envs/AGAT/lib/perl5/site_perl/Bio/DB/IndexedBase.pm:758
STACK Bio::DB::Fasta::_calculate_offsets /home/dell/anaconda3/envs/AGAT/lib/perl5/site_perl/Bio/DB/Fasta.pm:227
STACK Bio::DB::IndexedBase::_index_files /home/dell/anaconda3/envs/AGAT/lib/perl5/site_perl/Bio/DB/IndexedBase.pm:660
STACK Bio::DB::IndexedBase::index_file /home/dell/anaconda3/envs/AGAT/lib/perl5/site_perl/Bio/DB/IndexedBase.pm:488
STACK Bio::DB::IndexedBase::new /home/dell/anaconda3/envs/AGAT/lib/perl5/site_perl/Bio/DB/IndexedBase.pm:365
STACK toplevel /home/dell/anaconda3/envs/AGAT/bin/agat_sp_add_start_and_stop.pl:94
I ran awk 'length($0) > 65536' input.gff to check the lines, but no line appeared
Describe the bug When I ran the scripts
agat_sp_add_start_and_stop.pl
, it told that MSG: Each line of the file must be less than 65,536 characters. Line 28 is 85016 chars.General (please complete the following information):
To Reproduce
Screenshots The process was stopped and the Blas_stdAGATstart_and_stop.gff was empty
I ran
awk 'length($0) > 65536' input.gff
to check the lines, but no line appeared