search

NBISweden / MrBayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
http://NBISweden.github.io/MrBayes/
GNU General Public License v3.0
234 stars 79 forks source link

Issue with MSC, 'prset popsizepr' #275

Closed johnpatramanis closed 1 year ago

johnpatramanis commented 2 years ago

Steps to reproduce the bug:

  1. Run Commands in MSC_MrBayes.txt file, with CONCATINATED_o.nex in the same folder
  2. Nexus files is attached (changed name to upload here, contains protein data for hominids + ancient protein data from recent publications)

Would you be able to compile and run MrBayes to test fixes to this bug?

What is the environment that you run MrBayes in?

Operating System: Red Hat Enterprise Linux 8.5 (Ootpa) CPE OS Name: cpe:/o:redhat:enterprise_linux:8::baseos Kernel: Linux 4.18.0-348.20.1.el8_5.x86_64

MrBayes 3.2.7

Features: SSE AVX FMA Beagle readline Host type: x86_64-conda-linux-gnu (CPU: x86_64) Compiler: gnu 9.3.0

Other information that may be of use to us in resolving this issue

Files to reproduce: Commands: MSC_MrBayes.txt Data: CONCATINATED_o_nex.txt

zhangchicool commented 1 year ago

Should be fixed in commit 6ca48fed8004580c519856842d402501ad736dcf. This was because the command did not deal with protein data.