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NBISweden / MrBayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
http://NBISweden.github.io/MrBayes/
GNU General Public License v3.0
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Error on MrBayes 3.2.7a x86_64 #284

Closed YordyC closed 10 months ago

YordyC commented 10 months ago

Hi, I'm trying to run my data but MrBayes report to me a error. I have 17 sequences with a length >2000000. I've already try wit "interleave", but still reporting the same bug.

MrBayes > exe SCOutBayes.nex

Executing file "SCOutBayes.nex" UNIX line termination Longest line length = 3006812 Parsing file Expecting NEXUS formatted file Reading taxa block Allocated taxon set Defining new set of 17 taxa Exiting taxa block Reading characters block Allocated matrix Defining new character matrix with 3006800 characters Data is Dna Gaps coded as - Data matrix is interleaved Taxon 1 -> CJ Error while parsing a string. Token "GGCGCGGGGGCGGGGAGGCC...[followed by at least 99970 more charectors]" is too long. Maximum allowed length of a token is 99990 The error occurred when reading char. 100067-100086 on line 10 in the file 'SCOutBayes.nex'

I appreciate your help.
zhangchicool commented 10 months ago

The longest line supported is 99990, as reported by the error message. You can shorten the number of charactors in each line if you use interleaved format. Refer to issue #113.