Open gaurav opened 1 year ago
This doesn't seem to be fixed by just turning off preferred label boosting, and it doesn't help that the mouse gene doesn't currently include tp53
as a synonym:
{
"NCBIGene:7157": [
"TRP53",
"tumor suppressor p53",
"TP53 gene",
"gene p53",
"p53 tumor suppressor",
"p53 oncogene",
"Genes, p53",
"LFS1",
"p53 Genes",
"p53 tumor suppressor gene",
"TP A 053 GENES",
"LFS1",
"p53",
"TP53 Gene",
"TP53",
"Gene, p53",
"Gene, TP53",
"p53",
"P A 053 GENES",
"Li-Fraumeni syndrome",
"GENES TP 053",
"TP53 Genes",
"TUMOR PROTEIN p53",
"P53",
"p53 Gene",
"Li-Fraumeni syndrome",
"p53 gene",
"Tumor Protein P53 (Li-Fraumeni Syndrome) Gene",
"tumor protein p53",
"Genes, TP53",
"GENES P 053",
"TRANSFORMATION-RELATED PROTEIN 53",
"tp53"
],
"NCBIGene:22059": [
"Trp53 (Mmus)",
"Trp53"
]
}
So, possible solutions:
I'll take this up again after the Relay.
I think it would be interesting to conflate the protein IDs with these. Definitely worth discussing.
I think that if the mouse gene does not have an alias that not showing it is probably right. So, I am not so concerned that it does not. But expanding the search for the genes would be worth while.
I don't think this is a super high priority, so I'm going to schedule it for Hammerhead. But if anybody has any idea why tp53 has a different name in mice, or knows of a database that includes "tp53" as a synonym for trp53 (Mmus), please let me know!
This is because the human gene has a preferred label of
tp53
, while the mouse gene has a preferred label oftrp53
. It is therefore being sorted below all the other genes that have a preferred label oftp53
. I'll try to turn off preferred label boosting and see if that fixes this issue without causing problems with other searches.Reported by @Genomewide