Receptor, IGF Type 1 from MESH:D017526 not correctly normalized

TranslatorIssueCreator commented 1 year ago

Type: Bug Report

URL: https://ui.test.transltr.io/main?fm=true

ARS PK: d62dfecf-5b6e-4156-bf08-fc9095dc8666

Steps to reproduce:

MVP1 on MODY submitted by @sandrine-muller-research

Screenshots:

sandrine-muller-research commented 1 year ago

The Receptor, IGF Type 1 is shown as a chemical entity and should be a biological entity:

{
  "MESH:D017526": {
    "id": {
      "identifier": "MESH:D017526",
      "label": "Receptor, IGF Type 1"
    },
    "equivalent_identifiers": [
      {
        "identifier": "MESH:D017526",
        "label": "Receptor, IGF Type 1"
      },
      {
        "identifier": "UMLS:C0140080",
        "label": "Insulin-Like-Growth Factor I Receptor"
      }
    ],
    "type": [
      "biolink:ChemicalEntity",
      "biolink:NamedThing",
      "biolink:Entity",
      "biolink:PhysicalEssence",
      "biolink:ChemicalOrDrugOrTreatment",
      "biolink:ChemicalEntityOrGeneOrGeneProduct",
      "biolink:ChemicalEntityOrProteinOrPolypeptide",
      "biolink:PhysicalEssenceOrOccurrent"
    ]
  }
}

gaurav commented 9 months ago

Tracking on Babel at https://github.com/TranslatorSRI/Babel/issues/200

gaurav commented 3 months ago

Just to add another detail to this: AFAICT we don't have a type for MESH:D017526, but we put them in a clique with UMLS:C0140080, which we determine to have a type of ChemicalEntity, even though it has three types which shouldn't be mapped to ChemicalEntity:

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