andrewsu
commented
3 days ago This partly has to do with us ingesting SuppKG, a resource that links dietary supplements to diseases. More details can be found in https://github.com/biothings/pending.api/issues/55 and https://github.com/biothings/biothings_explorer/issues/706, but the TLDR is that the resource invented these UMLS-like identifiers in cases where they didn't find a suitable UMLS identifier that already existed. We (internally) discussed the issue when we brought SuppKG on board and decided to just move forward since these are a relatively small proportion of suppKG as a whole, but we are certainly open to revisiting...
There is also something strange with the lack of EPC here, related to https://github.com/NCATSTranslator/Feedback/issues/831. We'll be looking into that one as well...
sstemann
I'm not sure if this is a BTE issue or not but when I run the query, MVP1 What may treat Bethlem Myopathy, i get dimethyl sulfoxide twice, in in the UI
https://ui.test.transltr.io/main/results?l=Bethlem%20Myopathy&i=MONDO:0008029&t=0&r=0&q=a04bff0e-1b72-494c-ae67-6f1fbc7aa66e
Both say BTE
In the ARAX GUI > BTE > Result 40 shows dimethyl sulfoxide with CURIE UMLS:DC0012403, which I cannot find in the UMLS Metathesaurus
If I drop the D and search for UMLS:C0012403, I get dimethyl sulfoxide
Result 94 is CHEBI:28262 which seems normal
I'm sending to BTE first, I'm not sure if its really an NN issue given the CURIE looks non-existent