Update KG2 for KL/AT (Fugu), Unsecret Update latest KG2 (Guppy)

[sstemann]

Could be minor but is there another option instead of "UNKNOWN"?

https://ui.test.transltr.io/main/results?l=Metaphyseal%20Chondrodysplasia,%20Jansen%20Type&i=MONDO:0007982&t=0&r=0&q=0351d580-45b7-4c7b-8cb1-c56a798f7d66

@mbrush tagging you for this DISEASES source KL/AT tagging. I think it's ARAX > KG2 > Diseases

[dnsmith124]

In the case of this edge the UI's FE receives a knowledge level of "unknown" for this source, tagging @gprice1129 for input on how to proceed.

[sierra-moxon]

I believe @saramsey and Erica are working on a new release of RTX-KG2 with KL/AT filled in that should be released in Fugu (Sprint 4). The default here for KPs should be "not provided" if the KL or AT can not be determined. Maybe the UI could use "Not Provided" by default instead of "UNKNOWN"?

[gprice1129]

@mbrush this is KL mixed, please advise.

[saramsey]

See these issues to track our team's progress toward providing KL/AT in the RTX-KG2 KP: https://github.com/RTXteam/RTX-KG2/issues/358 https://github.com/RTXteam/RTX/issues/2319

My understanding from @ecwood is that the code updates for providing KL/AT edge attributes in the KG2pre graph build are already completed. Now the downstream work (@amykglen and @sundareswarpullela can comment) to provide those edge attributes in KG2c and in responses returned by the RTX-KG2 KP, is happening. We are aiming to roll this out in Sprint 4 (7/26 release-to-test deadline).

[saramsey]

This is fixed in CI, and the fix should be in the updated RTX-KG2 that is slated to be deployed to ITRB TEST early next week. See #818 for more details about that deployment.

[sstemann]

this is still in the UI in Fugu, my guess is that Unsecret needs to ingest the latest KG2 with these changes, but I can't see the support graphs in the ARAX GUI anymore.

Unsecret Only Results

Disease Edges

In this specific query, ARAX does not have results.

https://ui.test.transltr.io/main/results?l=Metaphyseal%20Chondrodysplasia,%20Jansen%20Type&i=MONDO:0007982&t=0&r=0&q=6cc2f6d5-75b4-4f1d-8eac-34d9f61c6477

It looks fixed for ARAX https://ui.test.transltr.io/main/results?l=Aceruloplasminemia&i=MONDO:0011426&t=0&r=0&q=0e83e4a4-0af7-4b6d-8287-53fecd44b8f2

[kaiwenho]

this is still in the UI in Fugu, my guess is that Unsecret needs to ingest the latest KG2 with these changes

Yes. Unsecret will have this solved by the end of the current sprint (Guppy) via importing KGs that contain information of KL and AT.

[kaiwenho]

this is still in the UI in Fugu, my guess is that Unsecret needs to ingest the latest KG2 with these changes Yes. Unsecret will have this solved by the end of the current sprint (Guppy) via importing KGs that contain information of KL and AT.

Unsecret has updated the KGs in CI. The AT and KL for each edges (inferred or component) can be seen now.

[sierra-moxon]

closing as complete!