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NIRALUser / DTIPlayground

An integrated framework for DWI Image QC and processing
MIT License
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Need also concatenated global deformation #46

Closed styner closed 1 year ago

styner commented 1 year ago

Currently only the concatenated inverse global deformation fields are generated in the deformation fields folder, but also (and actually more so) the concatenated global deformation are needed to be generated.

These concatenated global deformation files also need to be listed in the atlas output CSV file for the DTIAtlasFiberAnalyzer computation.

scalphunters commented 1 year ago

I edited due to wrong information. Currently dmriatlas already generates both inverse and original displacement fields in 'displacement_fields' directory.

For csv file, if exemplary format is given, I can work on that.

Example output:

FinalAtlas_ImageTest1_InverseGlobalDisplacementField_Concatenated.nrrd FinalAtlas_ImageTest2_InverseGlobalDisplacementField_Concatenated.nrrd FinalAtlas_ImageTest3_InverseGlobalDisplacementField_Concatenated.nrrd ImageTest1_FinalAtlas_GlobalDisplacementField_Concatenated.nrrd ImageTest2_FinalAtlas_GlobalDisplacementField_Concatenated.nrrd ImageTest3_FinalAtlas_GlobalDisplacementField_Concatenated.nrrd

scalphunters commented 1 year ago

v0.5.7b12 resolved this issue. closing this thread.