moved all rmd files from docs folder into vignettes folder
moved all static figures used in vignettes into figures folder (subfolder of vignettes)
added supportingFiles folder for google drive csv's (so we dont have to access google drive in pkgdown workflow)
changed file paths references
data-raw folder
Moved all R code into R folder (subfolder of data-raw). This includes simulated-data folder, diagnostics folder, code folder.
Created a data folder to store intermediate data files created but not delivered in package
Not all R scripts/functions have been moved from data-raw root
Some RDS files deleted and replaced with rda versions (see below)
data folder
created data files for
focalSpecies
fleets
catchAtLengthProportions`
allSpeciesProportions`
gis files
moved to data-raw/gis since these are used mainly for vignetes and some data processing. We may need to move some into inst/extdata if we want them available to the user of the data package.
Vignettes folder
figuresfolder (subfolder of vignettes)supportingFilesfolder for google drive csv's (so we dont have to access google drive in pkgdown workflow)data-raw folder
Rfolder (subfolder of data-raw). This includessimulated-datafolder,diagnosticsfolder,codefolder.datafolder to store intermediate data files created but not delivered in packagedata folder
focalSpeciesfleetsgis files
data-raw/gissince these are used mainly for vignetes and some data processing. We may need to move some intoinst/extdataif we want them available to the user of the data package.