1-w
commented
1 year ago Which tensor flow version do you use?
Closed 1-w closed 1 year ago
1-w
commented
1 year ago Which tensor flow version do you use?
ravnoor
commented
1 year ago TensorFlow isn't a hard dependency of the deepFCD project. It still runs on the deprecated Theano backend of Keras.
TensorFlow and TensorFlow-Probability are required by the ANTsPyNet dependency which is used for brain extraction. It is embedded within the deepMask project and is triggered only when preprocessing is done on the CPU (os.environ.get("BRAIN_MASKING") == "cpu"), since deepMask is resource-efficient only when run on the GPU.
I'll update deepMask with the following code so that modules aren't unnecessarily imported:
if os.environ.get("BRAIN_MASKING") == "cpu":
from antspynet.utilities import brain_extraction
Installation broken since packages not available anymore and tensorflow version not specified
Description
antspyx==0.3.5 not available
Expected Behavior
Actual Behavior
Possible Fix
works with the following combination:
antspyx==0.3.8 --only-binary=antspyx git+https://github.com/ravnoor/atlasreader@master#egg=atlasreader Theano==1.0.4 keras==2.2.4 h5py==2.10.0 matplotlib==3.5.1 mo-dots==9.147.22086 nibabel==3.2.2 nilearn==0.9.1 numpy==1.18.5 pandas==1.3.5 psutil==5.9.2 scikit-image==0.19.2 scikit-learn==1.0.2 scipy==1.7.3 setproctitle==1.2.3 tabulate==0.9.0 tqdm==4.64.0 xlrd==2.0.1 tensorflow==1.15.5 tensorflow_probability==0.8
Steps to Reproduce
1. 2. 3. 4.
Context
Your Environment