NOEL-MNI / deepFCD

Automated Detection of Focal Cortical Dysplasia using Deep Learning
https://noel.bic.mni.mcgill.ca/projects/
BSD 3-Clause "New" or "Revised" License
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Unable to locate code for thresholding and feeding voxels from CNN1 to CNN2 #24

Closed jaysheth09 closed 12 months ago

jaysheth09 commented 1 year ago

Description

I am trying to understand the code and have read the research paper, which states that when using the cascading model, voxels from CNN1 are supposed to be thresholded and then fed to CNN2. Specifically, the paper mentions that "the mean of 20 forward passes (or predictions) was thresholded at >0.1 (equivalent to rejecting bottom 10 percentile probabilities); voxels surviving this threshold served as the input to sample patches for CNN-2."

However, I have been unable to find the code for this thresholding operation in the train.py and base.py (train_mode()l method) file. I would appreciate it if someone could help me locate this code or provide further information on how it is implemented.

Additional information: