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NYU-Molecular-Pathology / snsxt

bioinformatics pipeline framework for data analysis
GNU General Public License v3.0
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integrate sns pipeline with snsxt #1

Closed stevekm closed 7 years ago

stevekm commented 7 years ago

Add the base sns pipeline as an embedded part of snsxt, so you can run the entire pipeline from just snsxt in a single step.

stevekm commented 7 years ago

added the submodule, next need to add integration maybe split the 'run.py' script into separate 'start sns' and 'analyze sns' scripts also consider single script with multiple arg subcommands with argparse or similar