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NYU-Molecular-Pathology
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snsxt
bioinformatics pipeline framework for data analysis
GNU General Public License v3.0
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Need more error checking of analysis task output
#7
Closed
stevekm
closed
7 years ago
stevekm
commented
7 years ago
[x] check
qacct
for compute jobs to verify exit status and check for jobs that finished with errors
[x] if its a qsub job, check that the job completed successfully
[x] check that expected task input files exist
[x] include in config per analysis step expected output file(s), and check that files exist upon completion of analysis step
[x] raise exceptions inside analysis tasks if task completion validations do not pass
[x] have separate email for errors and successful results, email only dev's & users in case of an error
[x] custom actions when custom exceptions are raised
qacct
for compute jobs to verify exit status and check for jobs that finished with errors