[FragPipe]_the protein FDR filter didn't reach the desired threshold, try a higher threshold using the --prot parameter

Nesvilab / FragPipe

A cross-platform proteomics data analysis suite

http://fragpipe.nesvilab.org

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[FragPipe]_the protein FDR filter didn't reach the desired threshold, try a higher threshold using the --prot parameter #1578

Closed Luc2702 closed 6 months ago

Luc2702 commented 6 months ago

log_2024-05-14_11-54-23.txt

Hello,

I am trying to perform label-free quantification with LFQ-MBR on mzML converted files. I am getting an error regarding FDR threshold. Would you have any idea how to fix this issue ? I have attached the log report.

Thanks for your help!

fcyu commented 6 months ago

Same as https://github.com/Nesvilab/philosopher/issues/493.