the protein FDR filter didn't reach the desired threshold, try a higher threshold using the --prot parameter

Nesvilab / FragPipe

A cross-platform proteomics data analysis suite

http://fragpipe.nesvilab.org

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the protein FDR filter didn't reach the desired threshold, try a higher threshold using the --prot parameter #1591

Closed Luc2702 closed 6 months ago

Luc2702 commented 6 months ago

Hello,

I am trying to perform label-free quantification with LFQ-MBR on mzML converted files. I am getting an error regarding FDR threshold. Would you have any idea how to fix this issue ? I have attached the log report.

Thanks for your help! log_2024-05-14_11-54-23 (1).txt

fcyu commented 6 months ago

You have submitted the same issue two times: https://github.com/Nesvilab/FragPipe/issues/1578 and https://github.com/Nesvilab/philosopher/issues/493#event-12924483133.

I think is is a waste of everyone's time if you submit the same question multiple times. I will close this one and reopen the one you closed on https://github.com/Nesvilab/philosopher/issues/493#event-12924483133 since it is a bug in Philosopher.

Best,

Fengchao

Luc2702 commented 6 months ago

Sorry about that ... I had closed by accident my previous post and was not sure how to reopen it ... Thank you for reopening it and once again sorry for the inconvenance.

Best