Nesvilab TMT-Integrator issues

Nesvilab / TMT-Integrator

A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.

http://tmt-integrator.nesvilab.org

12 stars 1 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Question Regarding Quantification Method in TMT-Integrator

#37 lfu46 closed 2 months ago
3
Issue with TMT-Integrator in Fragpipe v22.0

#36 lfu46 closed 3 months ago
2
Please Help: TMT integrator output doesn't have raw filename / experiment name in abundance columns

#35 kwebber3 closed 3 months ago
2
java.lang.NullPointerException

#34 carajj closed 3 months ago
2
Request for Assistance - TMT Integrator Issue in Quantification Step

#33 lfu46 closed 11 months ago
14
Help!there is no Ref_int_pool colunm in abundance_MD.tsv in new version

#32 xyzcc2007 closed 11 months ago
6
Empty TMT-Integrator Output

#31 helloworld1631 closed 1 year ago
2
Consistent error- TMT integrator can't find the 'Purity' column

#30 barny116 closed 11 months ago
1
Batch corrections with TMT integrator?

#29 ChiaraF96 closed 11 months ago
0
TMT Quantification Question

#28 barny116 closed 11 months ago
5
Possible to exclude empty TMT channels from all normalisation steps?

#27 p-bell closed 1 year ago
2
TMT-integrator exit code 137

#26 liorlobel closed 1 year ago
4
Issues with MSstats output - missing purity column header, wrong file format, no spectra identifiers

#25 antdit closed 1 year ago
20
Obtaining raw abundances without normalization/ratio with reference sample

#24 ananth-shantaraman closed 1 year ago
1
running failed at the step of tmt-integrator

#23 JasonYJWei closed 1 year ago
12
TMTintegrator cannot find "custom contaminant" and stops analysis

#22 jjGG opened 2 years ago
26
TMT-integrator outputs: abundance_multi-site Index Column

#21 jjGG closed 2 years ago
2
Question about Ratio to Abundance Conversion

#20 rudnickp closed 2 years ago
4
[Question] How can I get the acetylation result?

#19 NCCparksm closed 1 year ago
6
Can't edit two annotation files

#18 mwfoster closed 3 years ago
2
Some empty column names in output

#17 andreabc closed 3 years ago
4
Empty TMT Integrator outputs

#16 vinayakvsv closed 3 years ago
12
Advanced Options and TMT report in FragPipe 15

#15 enonimos closed 3 years ago
7
NumberFormatException running from FragPipe

#14 chambm closed 3 years ago
7
[question] Calculation of abundance in "abundance table"

#13 jgriss closed 3 years ago
2
[Question] tmt-integrator output

#12 skeffington closed 3 years ago
1
Multiple reference channels in a run

#11 ekawaler closed 3 years ago
1
empty TMT reports

#10 skeffington closed 3 years ago
21
Fix typo, add philosopher link

#9 sarah-haynes closed 3 months ago
1
improvement - avoid java.nio.file.NoSuchFileException when configuring replicates with TMT data

#8 merbllab closed 1 year ago
1
Blank output files when running with Philosopher pipeline

#7 ekawaler closed 4 years ago
8
Cannot export intensities without a reference channel

#6 asalt closed 3 years ago
6
Update README.md

#5 sarah-haynes closed 4 years ago
1
TMT10plex experimental design

#4 stuomiva closed 3 years ago
2
fail to generate output file

#3 clin888 closed 4 years ago
7
Using Table from other software

#1 Dmorgen closed 4 years ago
1