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Neural-Systems-at-UIO / nutil

https://nutil.readthedocs.io/en/latest/
GNU General Public License v3.0
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There are no object counts in the reports (N/A) #279

Closed nleonreyes closed 1 year ago

nleonreyes commented 1 year ago

Hello, after running Nutil I get the following message: Mon Feb 13 13:00:10 2023 : Required memory: 1.60217 GB. Free memory : 32605 GB from a total of 32605 GB installed (0 %) usage Mon Feb 13 13:00:12 2023 : ** Count of pixels 0 Mon Feb 13 13:00:12 2023 : ** Count of pixels 0

I already check and set the option "Object Splitting" = NO But still having no object counts. Does anyone face the same problem before? Maybe something is wrong related to the segmentation process. Thanks in advance, any help is welcome ;)

nleonreyes commented 1 year ago

And this is the Nutil_program output I get:

** Count of pixels 0" QIODevice::read (QFile, "\..\plot\plot_reference_atlas_regions.py"): device not open QIODevice::read (QFile, "\..\plot\plot_custom_regions.py"): device not open QIODevice::read (QFile, "\..\plot\plot_lib.py"): device not open

sharoncy commented 1 year ago

Hi. Thank you for your interest in Nutil. To investigate further I'll need some example files, please send at least one segmentation, a corresponding atlas map, the xml/JSON file from QuickNII or VisuAlign containing the registration info, and a copy of your .nut file to support@ebrains.eu (include a reference to Brain atlas services and Sharon Yates in the email). I'll get back to you as soon as I can.

nleonreyes commented 1 year ago

Hi, thank you so much for the quick reply, finally, I found the error, it was something very simple, I was introducing a wrong color code for the detection with Nutil, and once I replace the proper color code everything worked perfectly. Sorry for the spam, And thanks again for such a great tool