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Nextomics / NextPolish

Fast and accurately polish the genome generated by long reads.
GNU General Public License v3.0
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How many bases are corrected in each iteration? #61

Closed slbai01 closed 3 years ago

slbai01 commented 3 years ago

I polished the genome use nextpolish1.py script, and I'm not found any file contained the corrected base information, like arrow or pilon output vcf file. It should be noted that I have not run it in single command mode nextPolish run.cfg, so I am not sure if this is a problem.

moold commented 3 years ago

You can use -debug option to trace changed bases and see #29 and here for more details.

slbai01 commented 3 years ago

You can use -debug option to trace changed bases and see #29 and here for more details.

Thanks for your quickly reply. : )