Nextomics / NextPolish

Fast and accurately polish the genome generated by long reads.
GNU General Public License v3.0
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Nextpolish on slurm #79

Closed aureliendejode closed 3 years ago

aureliendejode commented 3 years ago

Hi,

I am trying to run Next Polish on a slurm cluster. To do so I need to pass several info when I normally submit a job on the cluster, one of which is a flag precising the account. So it looks like this: sbatch -A account script.sh

Is there a way to pass that -A flag to all the job submitted by the nextPolish run.cfg command ?

Thanks

moold commented 3 years ago

Yes, try cluster_option = -A account --cpus-per-task={cpu} --mem-per-cpu={vf}