when nextpolish1.py or nextpolish2.py was used to polished my assembly，only polished.fa was get. How to stat the changes coused by
nextpolish1/2.py?
‘’python ~/biosoft/nextpolish/lib/nextpolish2.py -g ${input} -l lgs.sort.bam.fofn -r ${read_type} -p ${threads} -sp -o genome.nextpolish.fa‘’
moold
commented
2 years ago
when nextpolish1.py or nextpolish2.py was used to polished my assembly，only polished.fa was get. How to stat the changes coused by nextpolish1/2.py? ‘’python ~/biosoft/nextpolish/lib/nextpolish2.py -g ${input} -l lgs.sort.bam.fofn -r ${read_type} -p ${threads} -sp -o genome.nextpolish.fa‘’