Nextomics NextPolish issues

Nextomics / NextPolish

Fast and accurately polish the genome generated by long reads.

GNU General Public License v3.0

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issues

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How long and how much memory should NextPolish require?

#90 kcl58759 opened 2 years ago
4
db split1 issue

#89 kcl58759 opened 2 years ago
6
Unable to run nextpolish program

#88 amit4mchiba opened 2 years ago
3
Errors with nextPolish.sh.e

#87 Gerlex89 opened 2 years ago
8
Can I use the RNAseq data for genome polishing?

#86 CGsTree closed 2 years ago
2
Some question about pacbio hifi data polish

#85 xiaobaiymq closed 2 years ago
6
unable to create files for use for nextpolish.py from a offline method

#84 amit4mchiba closed 3 years ago
4
NextPolish 1.4.0 does not complile with GCC 10 (under Debian 11)

#83 pvstodghill closed 3 years ago
3
Missing .stats file ... ?

#82 josieparis closed 3 years ago
2
Using Illumina reads containing "N" bases

#81 cgjosephlee closed 3 years ago
1
Memory issue at index_genome

#80 rotoke closed 3 years ago
2
Nextpolish on slurm

#79 aureliendejode closed 3 years ago
1
nextPolish: "shutil.Error: Cannot move a directory onto itself"

#78 shankar2318 closed 3 years ago
1
liblzma.so.0 not found

#77 gorliver closed 3 years ago
2
Error when running test data

#76 Amarea1 opened 3 years ago
1
stuck at 03.kmer_count, seq_split outputs FASTA file instead of FASTQ

#75 ctxchris closed 3 years ago
5
Samtools not finding libraries

#74 Neato-Nick closed 3 years ago
2
Short reads pre-processing before polishing

#73 aureliendejode opened 3 years ago
3
make: *** [Makefile:18：all] 错误 2

#72 WJT0925 closed 3 years ago
1
Illumina, HiFi, and Nanopore -- best strategy?

#71 StefanoLonardi closed 3 years ago
3
Error_report

#70 kishor2019 opened 3 years ago
2
liblzma error

#69 kishor2019 closed 3 years ago
2
Problem with NextPolish for centos6.9

#68 misago162 closed 3 years ago
6
nextPolish on Docker

#67 marco91sol opened 3 years ago
1
python2: ctg_cns.c:2787: find_sup_alns: Assertion `i != sup_aln->i' failed.

#66 lurebgi closed 3 years ago
4
Could you provide an example how to use cluster_options?

#65 MinjieHu opened 3 years ago
1
BUSCO and LAI decrease after polish

#64 Weihankk opened 3 years ago
1
lower case introduced after nanopolish

#63 longzhangnation closed 3 years ago
2
The meaning of "Max_depth"

#62 lilinzhou closed 3 years ago
1
How many bases are corrected in each iteration?

#61 slbai01 closed 3 years ago
2
How to rerun a unfinished job ?

#60 biozhangzhou closed 3 years ago
3
Ploidy option in config file?

#59 cizydorczyk closed 4 years ago
2
NextPolish stuck on/after step 6 merging bams when polishing with long and short reads.

#58 Rob-murphys closed 3 years ago
21
Running NextPolish on transcriptome?

#57 xuesoso opened 4 years ago
1
Using Mate-paired reads

#56 rmarquezp closed 4 years ago
2
Exceplionally long run time for fungal genomes, is this normal?

#55 Rob-murphys closed 3 years ago
23
How to polish with long reads and short reads in Single-End mode

#54 gitcruz opened 4 years ago
5
Single-End mode for polishing with illumina short reads

#53 gitcruz closed 4 years ago
1
NextPolish Installation

#52 marco91sol opened 4 years ago
1
error with test data

#51 dtusso2020 closed 4 years ago
2
using Nextpolish and after polished ,produce more contigs

#50 guang-xi opened 4 years ago
4
Nextpolish unfinished

#49 Lcornet opened 4 years ago
3
About the question for polishing long reads

#48 MissLiXin opened 4 years ago
1
type error '<' not supported between instances of 'str' and 'int'

#47 binlu1981 closed 4 years ago
1
short reads polishing stopped for the second round

#46 longzhangnation opened 4 years ago
2
What is a proper "-min_read_len" options?

#45 AntetokounmJie closed 4 years ago
2
work with compressed fq file

#44 binlu1981 closed 4 years ago
1
polishing strategy and rounds

#43 binlu1981 opened 4 years ago
3
Some confusion about the seq_split and the paried fasta file

#42 AntetokounmJie closed 4 years ago
2
Two bugs for Nextpolish v1.2.4

#41 cassytha closed 3 years ago
0

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