NifTK / NiftyNet

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
http://niftynet.io
Apache License 2.0
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Remove unconnected islands #470

Open carlpe opened 4 years ago

carlpe commented 4 years ago

Is there a way to have small, unconnected islands (voxels which are false positive) removed automatically during post-processing? For instance with a threshold option to for example remove all islands smaller than 500 voxels. I have seen 3Dslicer having such an option, but would be great if such a technique would be added during the inference stage to have predictions without unconnected islands?