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OHDSI / StudyProtocolSandbox

This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.
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In comparison study skeleton #23

Open chandryou opened 6 years ago

chandryou commented 6 years ago

@schuemie , In comparison study skeleton, generateDiagnostics function `if (sum(!is.na(controlSubset$seLogRr)) >= 5) { fileName <- file.path(diagnosticsFolder, paste0("trueAndObs_a", analysisId, "_t", targetId, "c", comparatorId, "", label, ".png"))

controlSubset doesn't have targetEffectSize

    try(
      EmpiricalCalibration::plotTrueAndObserved(logRr = controlSubset$logRr, 
                                              seLogRr = controlSubset$seLogRr, 
                                              trueLogRr = log(controlSubset$targetEffectSize),
                                              fileName = fileName)
    )
  }`

In the controlSubset doesn't have targetEffectSize, so EmpiricalCalibration::plotTrueAndObserved doesn't work