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OLC-Bioinformatics
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ConFindr
Intra-species bacterial contamination detection
https://olc-bioinformatics.github.io/ConFindr/
MIT License
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Consider using SeqIO.index instead of looping through the whole FASTA.
#10
andersgs
closed
5 years ago
3
DB location not writable
#9
andersgs
closed
5 years ago
3
Xmx option
#8
antunderwood
closed
5 years ago
4
Consistent order for base depth counts in _contamination output files
#7
lowandrew
closed
5 years ago
2
Merge pull request #2 from lowandrew/master
#6
lowandrew
closed
5 years ago
0
base fraction cutoff
#5
antunderwood
closed
5 years ago
2
incorrect SNP counting?
#4
antunderwood
closed
5 years ago
2
TypeError: count() got an unexpected keyword argument 'contig'
#3
ammaraziz
closed
1 year ago
6
Merge pull request #1 from lowandrew/master
#2
lowandrew
closed
6 years ago
0
Created pipeline_contamination_detection.py to allow pipeline integration
#1
adamkoziol
closed
6 years ago
0
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