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OSGeo / homebrew-osgeo4mac

Mac homebrew tap for maintaining a stable work environment for the OSGeo.org geospatial toolset
https://git.io/fhh3X
BSD 3-Clause "New" or "Revised" License
364 stars 111 forks source link

Grass 7 build fails #283

Closed knussear closed 6 years ago

knussear commented 6 years ago

I'm getting the following error from

brew install osgeo/osgeo4mac/grass7

Any ideas what to do to resolve this?

==> ./configure --prefix=/usr/local/Cellar/grass7/7.2.2 --enable-shared --with-c ==> make GDAL_DYNAMIC= Last 15 lines from /Users/knussear/Library/Logs/Homebrew/grass7/02.make: /private/tmp/grass7-20171011-1829-oik9v5/grass-7.2.2/gui/wxpython/gmodeler /private/tmp/grass7-20171011-1829-oik9v5/grass-7.2.2/gui/wxpython/vdigit /private/tmp/grass7-20171011-1829-oik9v5/grass-7.2.2/gui/wxpython/gcp /private/tmp/grass7-20171011-1829-oik9v5/grass-7.2.2/gui/wxpython/timeline /private/tmp/grass7-20171011-1829-oik9v5/grass-7.2.2/gui/wxpython/tplot /private/tmp/grass7-20171011-1829-oik9v5/grass-7.2.2/gui/wxpython/iclass /private/tmp/grass7-20171011-1829-oik9v5/grass-7.2.2/visualization/ximgview

In case of errors please change into the directory with error and run 'make'. If you get multiple errors, you need to deal with them in the order they appear in the error log. If you get an error building a library, you will also get errors from anything which uses the library.

Finished compilation: Wed Oct 11 04:33:47 PDT 2017 make: *** [default] Error 1

dakcarto commented 6 years ago

Hi @knussear, thanks for reporting!

Please provide Troubleshooting logs.

Also note that the compilation error may be missing from any uploaded brew gits-logs. See: Finding-a-parallel-job-compilation-error

knussear commented 6 years ago

My first time doing this so please help me through Here are logs https://gist.github.com/6938eb89b7333fa006b45408cc488b18

dakcarto commented 6 years ago

I have not built grass7 yet with Xcode 9.0, but have uploaded a new 'bottle' binary that you can use for GRASS 7.2.2 in 11771de.

Retry with brew install grass7, which should pull the latest bottle for macOS 10.12.

Side note Looks like your brew doctor output is something you should probably address.

knussear commented 6 years ago

That one compiles, but I cannot load the gui

GRASS 7.2.2 (CC_Modeling):~ > g.gui wxpython Launching GUI in the background, please wait... wxnviz.py: This module requires the NumPy module, which could not be imported. It probably is not installed (it's not part of the standard Python distribution). See the Numeric Python site (http://numpy.scipy.org) for information on downloading source or binaries. Traceback (most recent call last): File "/usr/local/Cellar/grass7/7.2.2/grass-7.2.2/gui/wxpython/wxgui.py", line 158, in sys.exit(main()) File "/usr/local/Cellar/grass7/7.2.2/grass-7.2.2/gui/wxpython/wxgui.py", line 145, in main app = GMApp(workspaceFile) File "/usr/local/Cellar/grass7/7.2.2/grass-7.2.2/gui/wxpython/wxgui.py", line 48, in init wx.App.init(self, False) File "/usr/local/lib/python2.7/site-packages/wx-3.0-osx_cocoa/wx/_core.py", line 8628, in init self._BootstrapApp() File "/usr/local/lib/python2.7/site-packages/wx-3.0-osx_cocoa/wx/_core.py", line 8196, in _BootstrapApp return core.PyApp__BootstrapApp(*args, **kwargs) File "/usr/local/Cellar/grass7/7.2.2/grass-7.2.2/gui/wxpython/wxgui.py", line 90, in OnInit from lmgr.frame import GMFrame File "/usr/local/Cellar/grass7/7.2.2/grass-7.2.2/gui/wxpython/lmgr/frame.py", line 50, in from lmgr.layertree import LayerTree, LMIcons File "/usr/local/Cellar/grass7/7.2.2/grass-7.2.2/gui/wxpython/lmgr/layertree.py", line 38, in from mapdisp.frame import MapFrame File "/usr/local/Cellar/grass7/7.2.2/grass-7.2.2/gui/wxpython/mapdisp/frame.py", line 49, in from wxplot.histogram import HistogramPlotFrame File "/usr/local/Cellar/grass7/7.2.2/grass-7.2.2/gui/wxpython/wxplot/histogram.py", line 23, in import gui_core.wxlibplot as plot File "/usr/local/Cellar/grass7/7.2.2/grass-7.2.2/gui/wxpython/gui_core/wxlibplot.py", line 121, in import numpy as np ImportError: No module named numpy

however I do have numpy installed

/usr/local/bin/f2py

looking into the doctor

Ken

Larry Shaffer wrote:

I have not built |grass7| yet with Xcode 9.0, but have uploaded a new 'bottle' binary that you can use for GRASS 7.2.2 in 11771de https://github.com/OSGeo/homebrew-osgeo4mac/commit/11771de5827da27e28dff9299db87feecfdd8f36.

Retry with |brew install grass7|, which should pull the latest bottle for macOS 10.12.

/Side note/ Looks like your |brew doctor| output is something you should probably address.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/OSGeo/homebrew-osgeo4mac/issues/283#issuecomment-335967344, or mute the thread https://github.com/notifications/unsubscribe-auth/AC0QAzCuRZ4uNzdOsv6ha75sT3r7cDl5ks5srUFcgaJpZM4P1V-Q.

nickrobison commented 6 years ago

@knussear We recently made some changes to the grass7 formula, can you try again with the latest changes and report back if the issue is still occurring?

knussear commented 6 years ago

It still doesn't install for me I get errors to unlink, and after following instructions I get the same error.

Tortuga-3:PrintCerts knussear$ brew install grass7 ==> Installing grass7 from osgeo/osgeo4mac grass7: Another GRASS 7.x formula is linked: grass7

Do brew unlink grass7 then try installing this formula again. You can leave grass7 unlinked and installed as keg-only; however, launching it as keg-only may cause issues or crashes, since it will be now be referencing Python modules of any newly linked GRASS.

Keep all GRASS formulae unlinked if you wish to run multiple installs.

Error: An unsatisfied requirement failed this build. Tortuga-3:PrintCerts knussear$ brew unlink grass7 Error: No such keg: /usr/local/Cellar/grass7 Tortuga-3:PrintCerts knussear$

nickrobison commented 6 years ago

@knussear Do you by chance have grass6 or grass7-lts installed?

Can you post the output of:

ls `brew --prefix`/Cellar | grep grass
knussear commented 6 years ago

knussear$ lsbrew --prefix/Cellar | grep grass -bash: lsbrew: command not found

nickrobison commented 6 years ago

I think my command formatting got messed up. Try this:

ls -la $(brew --prefix)/Cellar | grep grass

knussear commented 6 years ago

Tortuga-3:PrintCerts knussear$ ls -la $(brew --prefix)/Cellar | grep grass Tortuga-3:PrintCerts knussear$

nickrobison commented 6 years ago

Can you post the output of brew doctor?

When the grass installation starts, it looks for any other grass7 installations in the homebrew bin, so perhaps there's another install that's not working.

Can you also run:

ls -la $(brew --prefix)/bin | grep grass
knussear commented 6 years ago

Here is Brew Doctor

Tortuga-3:PrintCerts knussear$ brew doctor Please note that these warnings are just used to help the Homebrew maintainers with debugging if you file an issue. If everything you use Homebrew for is working fine: please don't worry or file an issue; just ignore this. Thanks!

Warning: "config" scripts exist outside your system or Homebrew directories. ./configure scripts often look for *-config scripts to determine if software packages are installed, and what additional flags to use when compiling and linking.

Having additional scripts in your path can confuse software installed via Homebrew if the config script overrides a system or Homebrew provided script of the same name. We found the following "config" scripts: /Library/Frameworks/Python.framework/Versions/3.6/bin/python3.6m-config /Library/Frameworks/Python.framework/Versions/3.6/bin/python3-config /Library/Frameworks/Python.framework/Versions/3.6/bin/python3.6-config /Users/knussear/anaconda2/bin/python2-config /Users/knussear/anaconda2/bin/icu-config /Users/knussear/anaconda2/bin/krb5-config /Users/knussear/anaconda2/bin/freetype-config /Users/knussear/anaconda2/bin/xslt-config /Users/knussear/anaconda2/bin/libpng16-config /Users/knussear/anaconda2/bin/python2.7-config /Users/knussear/anaconda2/bin/libpng-config /Users/knussear/anaconda2/bin/xml2-config /Users/knussear/anaconda2/bin/python-config /Users/knussear/anaconda2/bin/gsl-config /Users/knussear/anaconda2/bin/curl-config /Users/knussear/anaconda2/bin/ncursesw6-config /Users/knussear/anaconda2/bin/pcre-config /Users/knussear/anaconda3/bin/icu-config /Users/knussear/anaconda3/bin/freetype-config /Users/knussear/anaconda3/bin/xslt-config /Users/knussear/anaconda3/bin/libpng16-config /Users/knussear/anaconda3/bin/python3.6m-config /Users/knussear/anaconda3/bin/libpng-config /Users/knussear/anaconda3/bin/xml2-config /Users/knussear/anaconda3/bin/python3-config /Users/knussear/anaconda3/bin/curl-config /Users/knussear/anaconda3/bin/ncursesw6-config /Users/knussear/anaconda3/bin/pcre-config /Users/knussear/anaconda3/bin/python3.6-config /Library/Frameworks/GDAL.framework/Versions/Current/Programs/gdal-config /usr/local/opt/pkg-config

Warning: libiconv files detected at a system prefix other than /usr. Homebrew doesn't provide a libiconv formula, and expects to link against the system version in /usr. libiconv in other prefixes can cause compile or link failure, especially if compiled with improper architectures. macOS itself never installs anything to /usr/local so it was either installed by a user or some other third party software.

tl;dr: delete these files: /usr/local/lib/libiconv.dylib /usr/local/lib/libiconv.dylib

Warning: Unbrewed dylibs were found in /usr/local/lib. If you didn't put them there on purpose they could cause problems when building Homebrew formulae, and may need to be deleted.

Unexpected dylibs: /usr/local/lib/libFileGDBAPI.dylib /usr/local/lib/libfgdbunixrtl.dylib /usr/local/lib/libgcc_s.1.dylib /usr/local/lib/libgcc_s.10.4.dylib /usr/local/lib/libgcc_s.10.5.dylib /usr/local/lib/libgfortran.2.0.0.dylib /usr/local/lib/libhwloc.5.dylib /usr/local/lib/libiconv.2.dylib /usr/local/lib/libiconv.dylib /usr/local/lib/libjags.3.dylib /usr/local/lib/libjrmath.0.dylib /usr/local/lib/libmpc.2.dylib /usr/local/lib/libnet.1.5.0.dylib /usr/local/lib/libnet.1.dylib /usr/local/lib/libnet.dylib /usr/local/lib/libtcl8.6.dylib /usr/local/lib/libtk8.6.dylib /usr/local/lib/libusb-0.1.4.dylib /usr/local/lib/libusb-1.0.0.dylib /usr/local/lib/libusb-1.0.dylib /usr/local/lib/libusb.dylib /usr/local/lib/libwine.1.0.dylib

Warning: Unbrewed header files were found in /usr/local/include. If you didn't put them there on purpose they could cause problems when building Homebrew formulae, and may need to be deleted.

Unexpected header files: /usr/local/include/FileGDBAPI.h /usr/local/include/FileGDBCore.h /usr/local/include/Geodatabase.h /usr/local/include/GeodatabaseManagement.h /usr/local/include/Raster.h /usr/local/include/Row.h /usr/local/include/Table.h /usr/local/include/Util.h /usr/local/include/fakemysql.h /usr/local/include/fakepq.h /usr/local/include/fakesql.h /usr/local/include/hwloc.h /usr/local/include/itcl.h /usr/local/include/itcl2TclOO.h /usr/local/include/itclDecls.h /usr/local/include/itclInt.h /usr/local/include/itclIntDecls.h /usr/local/include/itclMigrate2TclCore.h /usr/local/include/itclTclIntStubsFcn.h /usr/local/include/mysqlStubs.h /usr/local/include/odbcStubs.h /usr/local/include/pqStubs.h /usr/local/include/tcl.h /usr/local/include/tclDecls.h /usr/local/include/tclOO.h /usr/local/include/tclOODecls.h /usr/local/include/tclPlatDecls.h /usr/local/include/tclThread.h /usr/local/include/tclTomMath.h /usr/local/include/tclTomMathDecls.h /usr/local/include/tdbc.h /usr/local/include/tdbcDecls.h /usr/local/include/tdbcInt.h /usr/local/include/tk.h /usr/local/include/tkDecls.h /usr/local/include/tkPlatDecls.h /usr/local/include/webp/decode.h /usr/local/include/webp/demux.h /usr/local/include/webp/encode.h /usr/local/include/webp/mux.h /usr/local/include/webp/mux_types.h /usr/local/include/webp/types.h

Warning: Unbrewed .la files were found in /usr/local/lib. If you didn't put them there on purpose they could cause problems when building Homebrew formulae, and may need to be deleted.

Unexpected .la files: /usr/local/lib/libct.la /usr/local/lib/libsybdb.la

Warning: Unbrewed .pc files were found in /usr/local/lib/pkgconfig. If you didn't put them there on purpose they could cause problems when building Homebrew formulae, and may need to be deleted.

Unexpected .pc files: /usr/local/lib/pkgconfig/tcl.pc /usr/local/lib/pkgconfig/tk.pc

Warning: Unbrewed static libraries were found in /usr/local/lib. If you didn't put them there on purpose they could cause problems when building Homebrew formulae, and may need to be deleted.

Unexpected static libraries: /usr/local/lib/libtclstub8.6.a /usr/local/lib/libtkstub8.6.a /usr/local/lib/libwebp.a /usr/local/lib/libwebpdemux.a /usr/local/lib/libwebpmux.a

Warning: You have unlinked kegs in your Cellar Leaving kegs unlinked can lead to build-trouble and cause brews that depend on those kegs to fail to run properly once built. Run brew link on these: python

Warning: Broken symlinks were found. Remove them with brew prune: /usr/local/bin/aclocal /usr/local/bin/aclocal-1.15 /usr/local/bin/autoconf /usr/local/bin/autoheader /usr/local/bin/autom4te /usr/local/bin/automake /usr/local/bin/automake-1.15 /usr/local/bin/autoreconf /usr/local/bin/autoscan /usr/local/bin/autoupdate /usr/local/bin/cairo-sphinx /usr/local/bin/cairo-trace /usr/local/bin/cgal_create_CMakeLists /usr/local/bin/cgal_create_cmake_script /usr/local/bin/cgal_make_macosx_app /usr/local/bin/create_undef.pl /usr/local/bin/docker-credential-osxkeychain.backup /usr/local/bin/epsg_tr.py /usr/local/bin/esri2wkt.py /usr/local/bin/fc-cache /usr/local/bin/fc-cat /usr/local/bin/fc-list /usr/local/bin/fc-match /usr/local/bin/fc-pattern /usr/local/bin/fc-query /usr/local/bin/fc-scan /usr/local/bin/fc-validate /usr/local/bin/fftw-wisdom /usr/local/bin/fftw-wisdom-to-conf /usr/local/bin/fftwf-wisdom /usr/local/bin/fftwl-wisdom /usr/local/bin/gapplication /usr/local/bin/gcps2vec.py /usr/local/bin/gcps2wld.py /usr/local/bin/gdal-config /usr/local/bin/gdal2tiles.py /usr/local/bin/gdal2xyz.py /usr/local/bin/gdal_auth.py /usr/local/bin/gdal_calc.py /usr/local/bin/gdal_contour /usr/local/bin/gdal_edit.py /usr/local/bin/gdal_fillnodata.py /usr/local/bin/gdal_grid /usr/local/bin/gdal_merge.py /usr/local/bin/gdal_polygonize.py /usr/local/bin/gdal_proximity.py /usr/local/bin/gdal_rasterize /usr/local/bin/gdal_retile.py /usr/local/bin/gdal_sieve.py /usr/local/bin/gdal_translate /usr/local/bin/gdaladdo /usr/local/bin/gdalbuildvrt /usr/local/bin/gdalchksum.py /usr/local/bin/gdalcompare.py /usr/local/bin/gdaldem /usr/local/bin/gdalenhance /usr/local/bin/gdalident.py /usr/local/bin/gdalimport.py /usr/local/bin/gdalinfo /usr/local/bin/gdallocationinfo /usr/local/bin/gdalmanage /usr/local/bin/gdalmove.py /usr/local/bin/gdalserver /usr/local/bin/gdalsrsinfo /usr/local/bin/gdaltindex /usr/local/bin/gdaltransform /usr/local/bin/gdalwarp /usr/local/bin/gdbus /usr/local/bin/gdbus-codegen /usr/local/bin/gio 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/usr/local/bin/qconvex /usr/local/bin/qdelaunay /usr/local/bin/qhalf /usr/local/bin/qhull /usr/local/bin/qvoronoi /usr/local/bin/raster2pgsql /usr/local/bin/rasterlite_grid /usr/local/bin/rasterlite_load /usr/local/bin/rasterlite_pyramid /usr/local/bin/rasterlite_tool /usr/local/bin/rasterlite_topmost /usr/local/bin/rbox /usr/local/bin/rgb2pct.py /usr/local/bin/saga_cmd /usr/local/bin/saga_gui /usr/local/bin/sfcgal-config /usr/local/bin/shp2pgsql /usr/local/bin/spatialite_gui /usr/local/bin/test_estimation.pl /usr/local/bin/test_geography_estimation.pl /usr/local/bin/test_geography_joinestimation.pl /usr/local/bin/test_joinestimation.pl /usr/local/bin/testepsg /usr/local/bin/tificc /usr/local/bin/transicc /usr/local/bin/vpnkit.backup /usr/local/bin/wx-config /usr/local/bin/wxrc /usr/local/bin/wxrc-3.0 /usr/local/bin/xml2-config /usr/local/bin/xmlcatalog /usr/local/bin/xmllint /usr/local/bin/xslt-config /usr/local/bin/xsltproc /usr/local/include/CGAL /usr/local/include/SFCGAL /usr/local/include/boost /usr/local/include/cairo /usr/local/include/cpl_atomic_ops.h /usr/local/include/cpl_config.h /usr/local/include/cpl_config_extras.h /usr/local/include/cpl_conv.h /usr/local/include/cpl_csv.h /usr/local/include/cpl_error.h /usr/local/include/cpl_hash_set.h /usr/local/include/cpl_http.h /usr/local/include/cpl_list.h /usr/local/include/cpl_minixml.h /usr/local/include/cpl_minizip_ioapi.h /usr/local/include/cpl_minizip_unzip.h /usr/local/include/cpl_minizip_zip.h /usr/local/include/cpl_multiproc.h /usr/local/include/cpl_odbc.h /usr/local/include/cpl_port.h /usr/local/include/cpl_progress.h /usr/local/include/cpl_quad_tree.h /usr/local/include/cpl_spawn.h /usr/local/include/cpl_string.h /usr/local/include/cpl_time.h /usr/local/include/cpl_virtualmem.h /usr/local/include/cpl_vsi.h /usr/local/include/cpl_vsi_virtual.h /usr/local/include/cpl_vsil_curl_priv.h /usr/local/include/cpl_win32ce_api.h /usr/local/include/cpl_wince.h /usr/local/include/cplkeywordparser.h 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knussear commented 6 years ago

Tortuga-3:PrintCerts knussear$ ls -la $(brew --prefix)/bin | grep grass lrwxr-xr-x 1 knussear admin 34 Oct 11 2017 grass72 -> ../Cellar/grass7/7.2.2/bin/grass72

nickrobison commented 6 years ago

@knussear Progress!

A couple of things.

  1. There's an old installation of grass7 still installed (linked) into your /usr/local/bin, but for some reason Homebrew doesn't know about it. Fortunately, grass only links a single item, so you should be able to remove it by doing:
rm -rf $(brew --prefix)/bin/grass72
rm -rf $(brew --prefix)/Cellar/grass7
  1. Based on your brew doctor output, it looks like there might be something really wrong with your homebrew installation, it seems to be claiming that everything in /usr/local is not a part of homebrew, which is strange. That may cause some errors later on if Homebrew tries to install something that already exists, but that's another issue for another day!
knussear commented 6 years ago

Got the install to go after removing. It gave me this warning

==> Pouring grass7-7.4.0.high_sierra.bottle.1.tar.gz
Warning: osgeo/osgeo4mac/grass7 dependency gcc was built with a different C++ standard
library (libstdc++ from clang). This may cause problems at runtime.

Won't load the GUI when running. Gives this error 

grass74
Starting GRASS GIS...
ERROR: wxGUI requires wxPython. No module named wx

Am I missing a component?

nickrobison commented 6 years ago

@knussear That error often occurs if you have another version of Python installed (such as Anaconda), in that case, there are a couple of things you can try:

Can you post the output of ls $(brew --prefix)/lib/python2.7/site-packages | grep wx

nickrobison commented 6 years ago

@knussear I'm going to close this issue, feel free to re-open if you're still encountering issues.