OceaneCsn / DIANE

Dashboard for the Inference and Analysis of Networks from Expression data
GNU General Public License v3.0
14 stars 4 forks source link

docker no build DIANE #43

Open ArturoArciniega opened 1 year ago

ArturoArciniega commented 1 year ago

Hello,

I'm trying to build DIANE using docker on arm64. I followed all the instructions but the following error pop up.

docker build -t diane .

[+] Building 0.9s (3/3) FINISHED                                                                 docker:desktop-linux
 => [internal] load .dockerignore                                                                                0.0s
 => => transferring context: 2B                                                                                  0.0s
 => [internal] load build definition from Dockerfile                                                             0.0s
 => => transferring dockerfile: 4.89kB                                                                           0.0s
 => ERROR [internal] load metadata for docker.io/rocker/shiny:4.2.1                                              0.9s
------
 > [internal] load metadata for docker.io/rocker/shiny:4.2.1:
------
Dockerfile:1
--------------------
   1 | >>> FROM rocker/shiny:4.2.1
   2 |
   3 |     RUN apt-get update && apt-get install -y  gdal-bin git-core libcurl4-openssl-dev libgdal-dev libgeos-dev libgeos++-dev libgit2-dev libglpk-dev libgmp-dev libssh2-1-dev libssl-dev libudunits2-dev libxml2-dev make pandoc pandoc-citeproc zlib1g-dev && rm -rf /var/lib/apt/lists/*
--------------------
ERROR: failed to solve: rocker/shiny:4.2.1: no match for platform in manifest sha256:2f905d9fe80a8c3828c45c1f8e3f40b44381268ce1943cdba76cc8274704c6e6: not found

Do you know what is happening?

Also the website gives me the following warning:

DataTables warning: table id=DataTables_Table_1 - Ajax error. For more information about this error, please see http://datatables.net/tn/7
OceaneCsn commented 1 year ago

Hello, Thank you for commenting on this. I have never encountered this problem, looks like an issue from rocker's image. Maybe @Alexandre-So will be able to help? Regarding the datable issue, are you talking about the online app at diane.ipsim.inrae.fr and diane.bpmp.inrae.fr? At what analysis step do you get this error? Best.

Alexandre-So commented 1 year ago

Hello,

Thank you for your comment.

It’s also the first time I’m seeing this problem. I have a few questions.

  1. Which operating system are you using ?

  2. Could you tell us more about the hardware configuration of the computer on which you are trying to install DIANE ?

Best,

Edit : it looks ike the problem with datatable is only present with : diane.bpmp.inrae.fr. You should use diane.ipsim.inrae.fr.

ChiaraLongo23 commented 1 year ago

Sorry. I can't reach diane.ipsim.inrae.fr because it returns automatically to https://diane.bpmp.inrae.fr/ And the data error (DataTables warning: table id=DataTables_Table_0 - Ajax error. For more information about this error, please see http://datatables.net/tn/7) it's still active. So it's quite impossibile to use Diane online...any solutions?

Alexandre-So commented 1 year ago

Indeed, there is a weird behavior with this version, these days. I will investigate this.

In the meantime, if you want to use DIANE online, you can use this URL : https://shinyapps.southgreen.fr/app/dianelatesttwo

And you can also try the latest "beta" version here : https://shinyapps.southgreen.fr/app/dianebeta

Best,

ChiaraLongo23 commented 1 year ago

Thanks!

Il giorno mar 18 lug 2023 alle ore 12:53 Alexandre Soriano < @.***> ha scritto:

Indeed, there is a weird behavior with this version, these days. I will investigate this.

In the meantime, if you want to use DIANE online, you can use this URL : https://shinyapps.southgreen.fr/app/dianelatesttwo

And you can also try the latest "beta" version here : https://shinyapps.southgreen.fr/app/dianebeta

Best,

— Reply to this email directly, view it on GitHub https://github.com/OceaneCsn/DIANE/issues/43#issuecomment-1639994748, or unsubscribe https://github.com/notifications/unsubscribe-auth/BBLDTM3E552K5CKOQCD7UNDXQZTJHANCNFSM6AAAAAAZZ5T5J4 . You are receiving this because you commented.Message ID: @.***>

-- *Fai crescere le giovani ricercatrici e i giovani ricercatori

*con il 5 per mille alla Sapienza Scrivi il codice fiscale dell'Università  80209930587 Cinque per mille https://www.uniroma1.it/it/node/23149