trim, bwa, and deduplication rules updated to work with single-end data

OpenOmics / chrom-seek

An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

https://openomics.github.io/chrom-seek/

MIT License

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trim, bwa, and deduplication rules updated to work with single-end data #22

Closed asyakhl closed 1 year ago

skchronicles commented 1 year ago

@asyakhl Everything looks good. I just have a few minor suggested changes. Other than what was mentioned in the review, did you update the cluster.json file? I saw that you renamed some of the rules in the snakefiles.

skchronicles commented 1 year ago

@asyakhl Thank you for making those changes. Everything looks great!