terminate called after throwing an instance of 'std::out_of_range'

Oshlack / JAFFA

JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

https://github.com/Oshlack/JAFFA/wiki

Other

86 stars 21 forks source link

terminate called after throwing an instance of 'std::out_of_range' #100

Open mw18f opened 10 months ago

mw18f commented 10 months ago

Hi, there is an error shows when run process_transcriptome_align_table. Any solutions? Thank you.

Done reading in transcript IDs Reading the input alignment file, AP169/AP169.paf 0 terminate called after throwing an instance of 'std::out_of_range' what(): map::at Aborted (core dumped)

nadiadavidson commented 8 months ago

Hi, Apologies for the very slow reply. Is the file AP169/AP169.paf empty? If so, can you remove it and try rerunning the pipeline? If it still fails and an empty AP169/AP169.paf is generated, you may want to check that the pipeline was installed correctly by running the demo data (https://github.com/Oshlack/JAFFA/wiki/Example).

Cheers, Nadia.