Another hard nut.
Source Paper:
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
The feature is the p value, that describes how different the MFE is from the same and different permutations of the contained nucleotides.
Ms. Kruse provided 2 Pearl Scripts, which do this calculation using the output file from rnafold.
Another hard nut. Source Paper: Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences The feature is the p value, that describes how different the MFE is from the same and different permutations of the contained nucleotides. Ms. Kruse provided 2 Pearl Scripts, which do this calculation using the output file from rnafold.