PNNL-Comp-Mass-Spec Informed-Proteomics issues

PNNL-Comp-Mass-Spec / Informed-Proteomics

Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data

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issues

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Sequence contains no elements

#33 dtabb73 opened 1 year ago
1
FDR filtering

#32 WinkelsK opened 2 years ago
2
Analysis of profile data MSPathFinder

#31 WinkelsK opened 2 years ago
4
General help

#30 Majorgroove opened 2 years ago
0
Output deconvoluted spectra for external visualization/analysis

#29 Apirog9 opened 2 years ago
0
Promex csv error

#28 Apirog9 opened 2 years ago
0
limiting search by mass, charge and seqence length

#27 Apirog9 opened 2 years ago
1
Issues in searching Thermo EThcD raw data

#26 wingkinlui opened 3 years ago
0
Is MSPathFinderT able to report isobaric proteoforms?

#25 wingkinlui closed 3 years ago
3
ProMex feature determination: Mass

#24 wingkinlui closed 3 years ago
2
Is there any way to batch export XIC data points(time & Intensity) of all PrSMs?

#23 wingkinlui closed 4 years ago
2
Reported proteoform masses is always 9Da less

#22 wingkinlui closed 4 years ago
2
Why is there no data in the generated RP4H_P32_WHIM2_biorep1_techrep3.ms1ft when RP4H_P32_WHIM2_biorep1_techrep3.ms1ft runs ProMex?

#21 flyman-ops opened 5 years ago
0
Can ProMex be used to extract feature from bottom up data

#20 lonelu opened 5 years ago
1
Why is there no data in the generated 2DLC_H3_1.ms1ft file?

#19 sunyusui opened 5 years ago
0
Why does the identified PrSM decrease a lot after using the modified file?

#18 sunyusui opened 5 years ago
1
What does this warning mean?

#17 sunyusui opened 5 years ago
5
Why am I running MSPathFinder slow?

#16 sunyusui closed 5 years ago
4
Error computing FDR: Cannot compute FDR Scores; target file is empty

#15 Arrow-V opened 5 years ago
1
How to install?

#14 yousade closed 5 years ago
2
How to use Agilent .d folder formats in PbfGen and ProMex?

#13 Arrow-V opened 5 years ago
14
Help to specify modification

#12 pkl5 closed 5 years ago
1
EThcD activation type

#11 AaronStorey opened 6 years ago
1
Export MS/MS sequence tags before scoring

#10 AaronStorey opened 6 years ago
0
Specify scan start and scan end in ProMex

#9 AaronStorey opened 6 years ago
1
"An item with the same key has already been added"

#8 grocklin opened 6 years ago
3
MSPathFinderT.exe crash

#7 somakray closed 6 years ago
3
.param/.mzid file does not include activation method

#6 detritus closed 5 years ago
3
Add argument to preventing halting when processing a batch

#5 detritus opened 6 years ago
4
Crash if NumMods >= 28

#4 detritus opened 6 years ago
1
Hex(2) treated as an unknown modification

#3 detritus closed 6 years ago
4
Create .mzid file if -tda 0

#2 detritus closed 6 years ago
2
Improper documentation

#1 Tweety79rw closed 7 years ago
1