ProteomeXchange notification after publication of PXD012889 via PX file did not work

PRIDE-Archive / pride-curation-scripts

Useful PRIDE Pipelines curation scripts

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ProteomeXchange notification after publication of PXD012889 via PX file did not work #14

Closed germa closed 5 years ago

germa commented 5 years ago

PXD012889 is public in PRIDE, but the sending of the PX message to ProteomeXchange failed: Validating PX message file: XML schema validation on PXD012889.xml FATAL XML Parsing error detected on line 10 see more ./log/publication/PXD012889-publication.log

runUpdatePXXml.sh also exited: javax.xml.bind.UnmarshalException: null see more ./log/publication/PXD012889-update-px-xml.log

sureshhewabi commented 5 years ago

@germa Error says:

Validating PX message file:
XML schema validation on PXD012889.xml
FATAL XML Parsing error detected on line 10
  Fatal Error message: An invalid XML character (Unicode: 0x1) was found in the element content of the document.

If you have a look in the XML line 10: <Description> ...... absolute fold change^A1.5 ...... </Description>

So this ^ character matters.

germa commented 5 years ago

Issue solved (removed the invalid character)