PacificBiosciences / HiPhase

Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

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STR support #20

Closed holtjma closed 1 year ago

holtjma commented 1 year ago

v1.0.0

Changes

Added support for tandem repeat calls from TRGT; minimum supported version - v0.5.0
VCF index files (.tbi) are now automatically generated by HiPhase
The reference FASTA file is now a required parameter for HiPhase; this change prevents sub-optimal performance caused by forgetting to specify the reference genome
HiPhase source code is now released under new LICENSE file

Fixed

Fixed an infinite looping error caused by variants with the same start POS but no overlapping mappings

holtjma commented 1 year ago

I think we're good to go:

Document changes look fine in GitHub
Build of repo was fine and tests passed
Full end-to-end test of v1.0.0 was a success