search

PacificBiosciences / pb-CpG-tools

Collection of tools for the analysis of CpG data
BSD 3-Clause Clear License
62 stars 5 forks source link

Tools for mapping methylation and expression relationships #62

Closed Wenwen012345 closed 4 months ago

Wenwen012345 commented 8 months ago

Hello author! @ctsa @jkaralius

I now want to map the relationship between methylation and expression around genes and within them. What tools can be used to achieve this? Specifically, the gene expression scores are expressed in sections, and then the methylation levels of these differently expressed genes are segmented on a line graph. It's similar to the picture below.

image

lanyunxin commented 8 months ago

https://github.com/GuoliangLi-HZAU/BatMeth2

lanyunxin commented 8 months ago

https://github.com/GuoliangLi-HZAU/BatMeth2

Wenwen012345 commented 8 months ago

https://github.com/GuoliangLi-HZAU/BatMeth2

Hello, thank you for your reply. I have tried this tool before, but there were formatting issues. I wrote a script myself to handle this problem.

lanyunxin commented 8 months ago

https://github.com/GuoliangLi-HZAU/BatMeth2

Hello, thank you for your reply. I have tried this tool before, but there were formatting issues. I wrote a script myself to handle this problem.

Did you draw this graph with the results of pb-CpG-tools? If possible, would you like to share with me how to draw it?

Wenwen012345 commented 8 months ago

Hello. I am quite busy these days. But that was achieved by the python script and drew by R. I may upload that relevant script someday.

---- Replied Message ---- | From | @.> | | Date | 11/06/2023 14:24 | | To | PacificBiosciences/pb-CpG-tools @.> | | Cc | Wenwen @.>, Author @.> | | Subject | Re: [PacificBiosciences/pb-CpG-tools] Tools for mapping methylation and expression relationships (Issue #62) |

https://github.com/GuoliangLi-HZAU/BatMeth2

Hello, thank you for your reply. I have tried this tool before, but there were formatting issues. I wrote a script myself to handle this problem.

Did you draw this graph with the results of pb-CpG-tools? If possible, would you like to share with me how to draw it?

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>