Resolving Error in 'run_infer.sh' Script Due to Duplicate 'bfd_database_path' Argument

PaddlePaddle / PaddleHelix

Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

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Resolving Error in 'run_infer.sh' Script Due to Duplicate 'bfd_database_path' Argument #359

Open davidwongmedinfo opened 1 week ago

davidwongmedinfo commented 1 week ago

Hi there, I encountered a problem when running the 'run_infer.sh' script with '--preset' set to 'full_dbs'. The error message was: ValueError: Could not find HHBlits database ./data/small_bfd/bfd-first_non_consensus_sequences.fasta. I noticed that there were two identical arguments '--bfd_database_path' specified, and this issue could be fixed by deleting the duplicate line: --bfd_database_path "$DATA_DIR/small_bfd/bfd-first_non_consensus_sequences.fasta".

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