Running mPTP on amino acid alignment

Pas-Kapli / mptp

mPTP - a tool for single-locus species delimitation

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Running mPTP on amino acid alignment #88

Closed Zichen-Zhou closed 1 month ago

Zichen-Zhou commented 1 month ago

Hi mPTP team,

I'm trying to run mPTP on an amino acid tree. I tried to test the min branch length on the amino acid alignment, and it keeps popping 'FASTA file does not contain equal size sequences' but all my sequences are length at 140bp. I tried all methods to check the fasta file but I don't think it has such problem. May I know how I can solve the issue? Thanks.

Regards, Zichen

stamatak commented 1 month ago

can you please post your question on the mPTP google group? Thank you.