Pas-Kapli mptp issues - Githubissues

Pas-Kapli / mptp

mPTP - a tool for single-locus species delimitation

GNU Affero General Public License v3.0

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issues

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Running mPTP on amino acid alignment

#88 Zichen-Zhou closed 1 month ago
1
Segmentation fault on mcmc run

#87 PrestonMcDonald opened 4 years ago
2
libgsl not detected

#86 PrestonMcDonald closed 4 years ago
2
node supports for speciation in the output tree suggest different result than the number of putative species determined

#85 pragyr opened 4 years ago
2
Bioconda

#84 brendanf opened 5 years ago
1
Output file to csv

#83 Lithobius opened 5 years ago
2
mptp: random.c:119: random_delimitation: Assertion `count == species_count' failed. Aborted (core dumped)

#82 githubgig closed 6 years ago
3
Tree is neither unrooted nor rooted

#81 Onaalvarez opened 6 years ago
7
problem in setting min branch lengths

#80 thkuo opened 7 years ago
2
Add precompiled Win64 and OSX binaries with statically linked gsl

#79 xflouris opened 7 years ago
0
Adapt mptp for cross-compilation and full compatibility with MSWIN

#78 xflouris opened 7 years ago
0
re-root already rooted trees

#77 Pas-Kapli opened 7 years ago
0
Replace hsearch with custom hash table

#76 xflouris closed 7 years ago
3
Implement dynamic loading of libgsl

#75 xflouris opened 8 years ago
0
Bug in support values

#74 xflouris closed 8 years ago
1
Screen output of MCMC sampling

#73 Pas-Kapli opened 8 years ago
0
add bash auto completion support for command-line argument

#72 xflouris closed 8 years ago
1
Use more portable re-entrant pseudo-random number generator

#71 xflouris closed 8 years ago
1
Support more tree file and alignment file formats

#70 lutteropp opened 8 years ago
4
Add option for disabling AIC testing

#69 lutteropp opened 8 years ago
1
Allow running mPTP and auto-estimating minimum branch length at once

#68 lutteropp opened 8 years ago
2
Support multifurcating trees

#67 lutteropp opened 8 years ago
2
Support taxon names like 'my_taxon'

#66 lutteropp closed 8 years ago
3
Fix compiler warnings

#65 lutteropp closed 8 years ago
2
Support outgroup cropping for rooted trees as well

#64 xflouris closed 8 years ago
0
Clean all unnecessary warnings

#63 xflouris closed 8 years ago
1
delete all `--bayes` options and bayesian priors

#62 xflouris closed 8 years ago
1
Rename --support option and create single and multi variations

#61 xflouris closed 8 years ago
1
Adjust ASV to be applied on any number of chains

#60 xflouris closed 8 years ago
1
Develop windows and mac versions

#59 stamatak opened 8 years ago
0
Test GCC 5 compliance

#58 xflouris opened 8 years ago
3
Mistake in 95 confidence interval computation

#57 xflouris closed 8 years ago
16
remove prior options from menu

#56 Pas-Kapli closed 9 years ago
1
Compute average support score for ML tree after bayesiananalysis

#55 xflouris opened 9 years ago
2
Fixed computation of confidence interval. Now, the confidence interva…

#54 lutteropp closed 9 years ago
1
Compute confidence interval for number of species

#53 xflouris closed 9 years ago
1
Test convergence of support values on multiple chains

#52 xflouris closed 9 years ago
1
Use pthreads for parallelizing multiple chains

#51 xflouris opened 9 years ago
0
Implement multiple chains in bayesian analysis

#50 xflouris closed 9 years ago
2
Set that support values are computed after burnin

#49 xflouris closed 9 years ago
1
Baptizing the software

#48 xflouris closed 9 years ago
3
Auto-detection of minimum branch length

#47 xflouris closed 9 years ago
7
Probability of number of species

#46 Pas-Kapli closed 9 years ago
1
Remove ks-single/multi

#45 Pas-Kapli closed 9 years ago
1
Visualize likelihood landscape in bayesian runs

#44 xflouris closed 9 years ago
3
Create a web-service

#43 xflouris opened 9 years ago
6
Create an autotools installer/dependency checker

#42 xflouris closed 9 years ago
1
Bayesian sampling - Multi-PTP heuristic Description

#41 Pas-Kapli opened 9 years ago
0
Bayesian sampling support for each node being a coalescent root

#40 Pas-Kapli opened 9 years ago
0
Visualize tree branch length distribution

#39 xflouris closed 9 years ago
1