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PecanProject / pecan

The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
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PEcAn/PostGIS install RHEL 6.5 #365

Closed serbinsh closed 9 years ago

serbinsh commented 9 years ago

@Viskari and I noted previously that we were having issues install postgis 2.x.x with PostgreSQL version 9.3.5 or 9.4.x. Initially the issues related to version of dependencies and associated issues stemming from the installs done by BNL ITD. I have fixed these issues by recompiling all dependencies, including many of the geospatial libs. By the way, I very useful resource can be found here:http://scigeo.org/articles/howto-install-latest-geospatial-software-on-linux.html

After all of the recompile (inlcuding autoconf, m4, libxml2, json-c, etc) and setting these all up as modules, I ran into another issue with postgis-2.1.5. This issues occurs during 'make' when it is building the raster libs:

/data/software/gdal/1.11.2/lib/libgdal.so: undefined reference to `GTIFAllocDefn'
/data/software/gdal/1.11.2/lib/libgdal.so: undefined reference to `nc_inq_var_chunking'
/data/software/gdal/1.11.2/lib/libgdal.so: undefined reference to `nc_def_var_chunking'
/data/software/gdal/1.11.2/lib/libgdal.so: undefined reference to `nc_def_var_deflate'
/data/software/gdal/1.11.2/lib/libgdal.so: undefined reference to `GTIFFreeDefn'
collect2: error: ld returned 1 exit status
make[2]: *** [raster2pgsql] Error 1
make[2]: Leaving directory `/data/software/src/postgis/postgis-2.1.5/raster/loader'
make[1]: *** [rtloader] Error 2
make[1]: Leaving directory `/data/software/src/postgis/postgis-2.1.5/raster'
make: *** [all] Error 1

However, I tried making the previous version of postgis (2.1.3) and that indeed worked:

make[2]: Leaving directory `/data/software/src/postgis/postgis-2.1.3/extensions/postgis_topology'
make[1]: Leaving directory `/data/software/src/postgis/postgis-2.1.3/extensions'
PostGIS was built successfully. Ready to install.

Therefore, I suspect there may be issues with the version 2.1.5 combined with the Proj4 (4.8.0), GEOS (3.4.2) and GDAL (1.11.2) libs I have installed.

Therefore, we are moving forward with PostGIS v 2.1.3 for now.

serbinsh commented 9 years ago

It seems that version 2.1.5 has an issue with the raster/loader extension during compile. I just tried making the 2.2.0dev version and that too worked OK:

make[2]: Leaving directory `/data/software/src/postgis/postgis-2.2.0dev/extensions/address_standardizer'
make[1]: Leaving directory `/data/software/src/postgis/postgis-2.2.0dev/extensions'
PostGIS was built successfully. Ready to install.
serbinsh commented 9 years ago

Another issue, and I think this is related to path problems within PostgreSQL. The issue is finding the libs associated with PostGIS (e.g. GDAL, JSON-C, GEOS). We have installed these in a non default location to provide capability with our cluster. As a result I think I need to update the environment for postgres so it can find these lib locations:

[sserbin@test postgis-2.1.3]$ psql -U sserbin -d bety
psql (9.4.1)
Type "help" for help.

bety=# CREATE EXTENSION postgis;
ERROR:  could not load library "/usr/pgsql-9.4/lib/postgis-2.1.so": libjson-c.so.2: cannot open shared object file: No such file or directory

Currently Loaded Modulefiles:
  1) /gcc/4.8.0             4) /autoconf/2.69         7) /libtiff/4.0.3        10) /geos/3.4.2           13) /hdf5/1.8.14          16) /libxml2/2.9.1
  2) /gfortran/4.8.0        5) /m4/1.4.17             8) /geotiff/1.4.1        11) /gdal/1.11.2          14) /netcdf/4.3.3.1       17) /json-c/0.11
  3) /openmpi/1.6.4-gnu48   6) /proj/4.8.0            9) /libkml/devel         12) /hdf4/4.2.11          15) /nco/4.4.8

[sserbin@test data]$ sudo -u sserbin psql -d bety -c "CREATE EXTENSION postgis;"
ERROR:  could not load library "/usr/pgsql-9.4/lib/rtpostgis-2.1.so": libgdal.so: cannot open shared object file: No such file or directory

[sserbin@test data]$ ldd /usr/pgsql-9.4/lib/rtpostgis-2.1.so
    linux-vdso.so.1 =>  (0x00007fff82dff000)
    libgdal.so => /data/software/gdal/1.11.2/lib/libgdal.so (0x00007fdd9c076000)
    libgeos_c.so.1 => /data/software/geos/3.4.2/lib/libgeos_c.so.1 (0x00007fdd9be50000)
    libm.so.6 => /lib64/libm.so.6 (0x00007fdd9bbb3000)
    libgcc_s.so.1 => /software/gcc-4.8.0/lib64/libgcc_s.so.1 (0x00007fdd9b99c000)
    libc.so.6 => /lib64/libc.so.6 (0x00007fdd9b608000)
    libsqlite3.so.0 => /usr/lib64/libsqlite3.so.0 (0x00007fdd9b379000)
    libodbc.so.2 => /usr/lib64/libodbc.so.2 (0x00007fdd9b111000)
    libodbcinst.so.2 => /usr/lib64/libodbcinst.so.2 (0x00007fdd9af00000)
    libkmldom.so.0 => /data/software/libkml/devel/lib/libkmldom.so.0 (0x00007fdd9ac51000)
    libkmlbase.so.0 => /data/software/libkml/devel/lib/libkmlbase.so.0 (0x00007fdd9aa3a000)
    libkmlengine.so.0 => /data/software/libkml/devel/lib/libkmlengine.so.0 (0x00007fdd9a804000)
    libkmlconvenience.so.0 => /data/software/libkml/devel/lib/libkmlconvenience.so.0 (0x00007fdd9a5e7000)
    libminizip.so.0 => /data/software/libkml/devel/lib/libminizip.so.0 (0x00007fdd9a3de000)
    liburiparser.so.1 => /data/software/libkml/devel/lib/liburiparser.so.1 (0x00007fdd9a1c7000)
    libexpat.so.1 => /lib64/libexpat.so.1 (0x00007fdd99f9f000)
    libxerces-c-3.0.so => /usr/lib64/libxerces-c-3.0.so (0x00007fdd999fd000)
    libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fdd997e0000)
    libjasper.so.1 => /usr/lib64/libjasper.so.1 (0x00007fdd99587000)
    libnetcdf.so.7 => /data/software/netcdf/4.3.3.1/lib/libnetcdf.so.7 (0x00007fdd96235000)
    libhdf5.so.9 => /data/software/hdf5/1.8.14/lib/libhdf5.so.9 (0x00007fdd95d44000)
    libmfhdf.so.0 => /data/software/hdf4/4.2.11/lib/libmfhdf.so.0 (0x00007fdd95b20000)
    libdf.so.0 => /data/software/hdf4/4.2.11/lib/libdf.so.0 (0x00007fdd9587c000)
    libjpeg.so.62 => /usr/lib64/libjpeg.so.62 (0x00007fdd9562c000)
    libgeotiff.so.2 => /data/software/geotiff/1.4.1/lib/libgeotiff.so.2 (0x00007fdd953f9000)
    libtiff.so.5 => /data/software/libtiff/4.0.3/lib/libtiff.so.5 (0x00007fdd95186000)
    libpng12.so.0 => /usr/lib64/libpng12.so.0 (0x00007fdd94f60000)
    libpq.so.5 => /usr/pgsql-9.4/lib/libpq.so.5 (0x00007fdd94d32000)
    libz.so.1 => /lib64/libz.so.1 (0x00007fdd94b1b000)
    librt.so.1 => /lib64/librt.so.1 (0x00007fdd94913000)
    libdl.so.2 => /lib64/libdl.so.2 (0x00007fdd9470f000)
    libpcre.so.0 => /lib64/libpcre.so.0 (0x00007fdd944e2000)
    libcurl.so.4 => /usr/lib64/libcurl.so.4 (0x00007fdd9428e000)
    libxml2.so.2 => /data/software/libxml2/2.9.1/lib/libxml2.so.2 (0x00007fdd93f32000)
    libmpi_cxx.so.1 => /software/mpi/openmpi/1.6.4-gnu48/lib/libmpi_cxx.so.1 (0x00007fdd93d17000)
    libmpi.so.1 => /software/mpi/openmpi/1.6.4-gnu48/lib/libmpi.so.1 (0x00007fdd9379a000)
    libnsl.so.1 => /lib64/libnsl.so.1 (0x00007fdd93581000)
    libutil.so.1 => /lib64/libutil.so.1 (0x00007fdd9337d000)
    libtorque.so.2 => /usr/lib64/libtorque.so.2 (0x00007fdd92aa4000)
    libstdc++.so.6 => /software/gcc-4.8.0/lib64/libstdc++.so.6 (0x00007fdd9279b000)
    libgeos-3.4.2.so => /data/software/geos/3.4.2/lib/libgeos-3.4.2.so (0x00007fdd92401000)
    /lib64/ld-linux-x86-64.so.2 (0x00000039d4600000)
    libltdl.so.7 => /usr/lib64/libltdl.so.7 (0x00007fdd921f8000)
    libcrypto.so.10 => /usr/lib64/libcrypto.so.10 (0x00007fdd91e14000)
    libssl.so.10 => /usr/lib64/libssl.so.10 (0x00007fdd91ba8000)
    libhdf5_hl.so.7 => /usr/lib64/libhdf5_hl.so.7 (0x00007fdd9197a000)
    libhdf5.so.7 => /usr/lib64/libhdf5.so.7 (0x00007fdd914dd000)
    liblzma.so.0 => /usr/lib64/liblzma.so.0 (0x00007fdd912bb000)
    libproj.so.0 => /data/software/proj/4.8.0/lib/libproj.so.0 (0x00007fdd9106e000)
    libgssapi_krb5.so.2 => /lib64/libgssapi_krb5.so.2 (0x00007fdd90e29000)
    libldap_r-2.4.so.2 => /lib64/libldap_r-2.4.so.2 (0x00007fdd90bd1000)
    libidn.so.11 => /lib64/libidn.so.11 (0x00007fdd9099f000)
    libldap-2.4.so.2 => /lib64/libldap-2.4.so.2 (0x00007fdd9074e000)
    libkrb5.so.3 => /lib64/libkrb5.so.3 (0x00007fdd90468000)
    libk5crypto.so.3 => /lib64/libk5crypto.so.3 (0x00007fdd9023c000)
    libcom_err.so.2 => /lib64/libcom_err.so.2 (0x00007fdd90037000)
    libssl3.so => /usr/lib64/libssl3.so (0x00007fdd8fdf8000)
    libsmime3.so => /usr/lib64/libsmime3.so (0x00007fdd8fbcc000)
    libnss3.so => /usr/lib64/libnss3.so (0x00007fdd8f88c000)
    libnssutil3.so => /usr/lib64/libnssutil3.so (0x00007fdd8f660000)
    libplds4.so => /lib64/libplds4.so (0x00007fdd8f45c000)
    libplc4.so => /lib64/libplc4.so (0x00007fdd8f256000)
    libnspr4.so => /lib64/libnspr4.so (0x00007fdd8f018000)
    libssh2.so.1 => /usr/lib64/libssh2.so.1 (0x00007fdd8edf0000)
    libkrb5support.so.0 => /lib64/libkrb5support.so.0 (0x00007fdd8ebe4000)
    libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x00007fdd8e9e0000)
    libresolv.so.2 => /lib64/libresolv.so.2 (0x00007fdd8e7c6000)
    liblber-2.4.so.2 => /lib64/liblber-2.4.so.2 (0x00007fdd8e5b7000)
    libsasl2.so.2 => /usr/lib64/libsasl2.so.2 (0x00007fdd8e39d000)
    libselinux.so.1 => /lib64/libselinux.so.1 (0x00007fdd8e17d000)
    libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007fdd8df45000)
    libfreebl3.so => /lib64/libfreebl3.so (0x00007fdd8dccc000)
serbinsh commented 9 years ago

Alternatively, maintain a separate install of these libs just for PostGIS....

dlebauer commented 9 years ago

@serbinsh - I think you are using ... when you should be using ``` to set off code blocks, and note that these are required before and after the code chunks

serbinsh commented 9 years ago

@dlebauer Can you please clarify?

dlebauer commented 9 years ago

easiest to point you to the Github Flavored Markdown section on 'Fenced Code Blocks'.

serbinsh commented 9 years ago

@robkooper

Again, this is the error we are getting during make:

make -C loader
make[2]: Entering directory `/data/software/src/postgis/postgis-2.1.7/raster/loader'
/bin/sh ../../libtool --mode=link mpicc -g -O2  -fPIC -DPIC  -Wall -Wmissing-prototypes -I../rt_core -I../../liblwgeom -I/data/software/proj/4.8.0/include -I/data/software/gdal/1.11.2/include -I/data/software/geos/3.4.2/include   ../rt_core/librtcore.a raster2pgsql.o ../../liblwgeom/liblwgeom.la -L/data/software/gdal/1.11.2/lib -lgdal  -L/data/software/geos/3.4.2/lib -lgeos_c  -lc -lm -o raster2pgsql
libtool: link: mpicc -g -O2 -fPIC -DPIC -Wall -Wmissing-prototypes -I../rt_core -I../../liblwgeom -I/data/software/proj/4.8.0/include -I/data/software/gdal/1.11.2/include -I/data/software/geos/3.4.2/include raster2pgsql.o -o .libs/raster2pgsql  ../rt_core/librtcore.a ../../liblwgeom/.libs/liblwgeom.so -L/data/software/geos/3.4.2/lib -L/data/software/proj/4.8.0/lib /data/software/proj/4.8.0/lib/libproj.so -ljson-c -L/data/software/gdal/1.11.2/lib -lgdal /data/software/geos/3.4.2/lib/libgeos_c.so /data/software/geos/3.4.2/lib/libgeos.so /data/software/openmpi/1.8.4-gnu484/lib/libmpi_cxx.so /data/software/openmpi/1.8.4-gnu484/lib/libmpi.so -libverbs /data/software/openmpi/1.8.4-gnu484/lib/libopen-rte.so /usr/lib64/libtorque.so -lpthread -lxml2 -lz -lcrypto -lssl /data/software/openmpi/1.8.4-gnu484/lib/libopen-pal.so -ldl -lrt -lutil /data/software/gcc-4.8.4/lib/../lib64/libstdc++.so -lc -lm -pthread -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/data/software/proj/4.8.0/lib -Wl,-rpath -Wl,/data/software/geos/3.4.2/lib -Wl,-rpath -Wl,/data/software/openmpi/1.8.4-gnu484/lib -Wl,-rpath -Wl,/data/software/gcc-4.8.4/lib/../lib64
/data/software/gdal/1.11.2/lib/libgdal.so: undefined reference to `GTIFAllocDefn'
/data/software/gdal/1.11.2/lib/libgdal.so: undefined reference to `GTIFFreeDefn'
collect2: error: ld returned 1 exit status
make[2]: *** [raster2pgsql] Error 1
make[2]: Leaving directory `/data/software/src/postgis/postgis-2.1.7/raster/loader'
make[1]: *** [rtloader] Error 2
make[1]: Leaving directory `/data/software/src/postgis/postgis-2.1.7/raster'
make: *** [all] Error 1

Here is our environment and how we installed GDAL:

PostgreSQL - /usr/pgsql-9.4/bin/pg_config libkml - /data/software/libkml/trunk libtiff - /data/software/libtiff/4.0.4 geotiff - /data/software/geotiff/1.4.1 geos - /data/software/geos/3.4.2/bin/geos-config HDF4 - /data/software/hdf4/4.2.11 HDF5 - /data/software/hdf5/1.8.14 netCDF - /data/software/netcdf/4.3.3.1

./configure --prefix=/data/software/gdal/1.11.2 --with-jpeg=external --with-jpeg12 --with-python --without-libtool --with-pg=/usr/pgsql-9.4/bin/pg_config --with-libkml=/data/software/libkml/trunk --with-libtiff=/data/software/libtiff/4.0.4 --with-geotiff=/data/software/geotiff/1.4.1 --with-geos=/data/software/geos/3.4.2/bin/geos-config --with-hdf4=/data/software/hdf4/4.2.11 --with-hdf5=/data/software/hdf5/1.8.14 --with-netcdf=/data/software/netcdf/4.3.3.1

I assumed this would give us TIFF support?

serbinsh commented 9 years ago

@robkooper @mdietze

gdal-config --formats gxf gtiff hfa aigrid aaigrid ceos ceos2 iso8211 xpm sdts raw dted mem jdem envisat elas fit vrt usgsdem l1b nitf bmp pcidsk airsar rs2 ilwis rmf leveller sgi srtmhgt idrisi gsg ingr ers jaxapalsar dimap gff cosar pds adrg coasp tsx terragen blx msgn til r northwood saga xyz hf2 kmlsuperoverlay ctg e00grid zmap ngsgeoid iris map wcs wms grib bsb jpeg2000 netcdf hdf5 hdf4 gif jpeg png pcraster rik ozi pdf rasterlite mbtiles postgisraster arg

gdalinfo --formats Supported Formats: VRT (rw+v): Virtual Raster GTiff (rw+vs): GeoTIFF NITF (rw+vs): National Imagery Transmission Format RPFTOC (rovs): Raster Product Format TOC format ECRGTOC (rovs): ECRG TOC format HFA (rw+v): Erdas Imagine Images (.img) SAR_CEOS (rov): CEOS SAR Image CEOS (rov): CEOS Image JAXAPALSAR (rov): JAXA PALSAR Product Reader (Level 1.1/1.5) GFF (rov): Ground-based SAR Applications Testbed File Format (.gff) ELAS (rw+v): ELAS AIG (rov): Arc/Info Binary Grid AAIGrid (rwv): Arc/Info ASCII Grid GRASSASCIIGrid (rov): GRASS ASCII Grid SDTS (rov): SDTS Raster DTED (rwv): DTED Elevation Raster PNG (rwv): Portable Network Graphics JPEG (rwv): JPEG JFIF MEM (rw+): In Memory Raster JDEM (rov): Japanese DEM (.mem) GIF (rwv): Graphics Interchange Format (.gif) BIGGIF (rov): Graphics Interchange Format (.gif) ESAT (rov): Envisat Image Format BSB (rov): Maptech BSB Nautical Charts XPM (rwv): X11 PixMap Format BMP (rw+v): MS Windows Device Independent Bitmap DIMAP (rov): SPOT DIMAP AirSAR (ro): AirSAR Polarimetric Image RS2 (ros): RadarSat 2 XML Product PCIDSK (rw+v): PCIDSK Database File PCRaster (rw): PCRaster Raster File ILWIS (rw+v): ILWIS Raster Map SGI (rw+): SGI Image File Format 1.0 SRTMHGT (rwv): SRTMHGT File Format Leveller (rw+): Leveller heightfield Terragen (rw+): Terragen heightfield GMT (rw): GMT NetCDF Grid Format netCDF (rw+s): Network Common Data Format HDF4 (ros): Hierarchical Data Format Release 4 HDF4Image (rw+): HDF4 Dataset ISIS3 (rov): USGS Astrogeology ISIS cube (Version 3) ISIS2 (rw+v): USGS Astrogeology ISIS cube (Version 2) PDS (rov): NASA Planetary Data System TIL (rov): EarthWatch .TIL ERS (rw+v): ERMapper .ers Labelled L1B (rovs): NOAA Polar Orbiter Level 1b Data Set FIT (rwv): FIT Image GRIB (rov): GRIdded Binary (.grb) JPEG2000 (rwv): JPEG-2000 part 1 (ISO/IEC 15444-1) RMF (rw+v): Raster Matrix Format WCS (rovs): OGC Web Coverage Service WMS (rwvs): OGC Web Map Service MSGN (ro): EUMETSAT Archive native (.nat) RST (rw+v): Idrisi Raster A.1 INGR (rw+v): Intergraph Raster GSAG (rwv): Golden Software ASCII Grid (.grd) GSBG (rw+v): Golden Software Binary Grid (.grd) GS7BG (rw+v): Golden Software 7 Binary Grid (.grd) COSAR (ro): COSAR Annotated Binary Matrix (TerraSAR-X) TSX (rov): TerraSAR-X Product COASP (ro): DRDC COASP SAR Processor Raster R (rwv): R Object Data Store MAP (rov): OziExplorer .MAP PNM (rw+v): Portable Pixmap Format (netpbm) DOQ1 (rov): USGS DOQ (Old Style) DOQ2 (rov): USGS DOQ (New Style) ENVI (rw+v): ENVI .hdr Labelled EHdr (rw+v): ESRI .hdr Labelled GenBin (rov): Generic Binary (.hdr Labelled) PAux (rw+): PCI .aux Labelled MFF (rw+): Vexcel MFF Raster MFF2 (rw+): Vexcel MFF2 (HKV) Raster FujiBAS (ro): Fuji BAS Scanner Image GSC (rov): GSC Geogrid FAST (rov): EOSAT FAST Format BT (rw+v): VTP .bt (Binary Terrain) 1.3 Format LAN (rw+v): Erdas .LAN/.GIS CPG (ro): Convair PolGASP IDA (rw+): Image Data and Analysis NDF (rov): NLAPS Data Format EIR (rov): Erdas Imagine Raw DIPEx (rov): DIPEx LCP (rwv): FARSITE v.4 Landscape File (.lcp) GTX (rw+v): NOAA Vertical Datum .GTX LOSLAS (rov): NADCON .los/.las Datum Grid Shift NTv2 (rw+vs): NTv2 Datum Grid Shift CTable2 (rw+v): CTable2 Datum Grid Shift ACE2 (rov): ACE2 SNODAS (rov): Snow Data Assimilation System KRO (rw+v): KOLOR Raw ARG (rwv): Azavea Raster Grid format RIK (ro): Swedish Grid RIK (.rik) USGSDEM (rwv): USGS Optional ASCII DEM (and CDED) GXF (ro): GeoSoft Grid Exchange Format HTTP (ro): HTTP Fetching Wrapper BAG (ro): Bathymetry Attributed Grid HDF5 (ros): Hierarchical Data Format Release 5 HDF5Image (ro): HDF5 Dataset NWT_GRD (rov): Northwood Numeric Grid Format .grd/.tab NWT_GRC (rov): Northwood Classified Grid Format .grc/.tab ADRG (rw+vs): ARC Digitized Raster Graphics SRP (rovs): Standard Raster Product (ASRP/USRP) BLX (rw): Magellan topo (.blx) Rasterlite (rws): Rasterlite PostGISRaster (rws): PostGIS Raster driver SAGA (rw+v): SAGA GIS Binary Grid (.sdat) KMLSUPEROVERLAY (rwv): Kml Super Overlay XYZ (rwv): ASCII Gridded XYZ HF2 (rwv): HF2/HFZ heightfield raster PDF (rw): Geospatial PDF OZI (rov): OziExplorer Image File CTG (rov): USGS LULC Composite Theme Grid E00GRID (rov): Arc/Info Export E00 GRID ZMap (rwv): ZMap Plus Grid NGSGEOID (rov): NOAA NGS Geoid Height Grids MBTiles (rov): MBTiles IRIS (rov): IRIS data (.PPI, .CAPPi etc)

ogrinfo --formats Supported Formats: -> "ESRI Shapefile" (read/write) -> "MapInfo File" (read/write) -> "UK .NTF" (readonly) -> "SDTS" (readonly) -> "TIGER" (read/write) -> "S57" (read/write) -> "DGN" (read/write) -> "VRT" (readonly) -> "REC" (readonly) -> "Memory" (read/write) -> "BNA" (read/write) -> "CSV" (read/write) -> "NAS" (readonly) -> "GML" (read/write) -> "GPX" (read/write) -> "KML" (read/write) -> "GeoJSON" (read/write) -> "Interlis 1" (read/write) -> "Interlis 2" (read/write) -> "GMT" (read/write) -> "GPKG" (read/write) -> "SQLite" (read/write) -> "ODBC" (read/write) -> "WAsP" (read/write) -> "PGeo" (readonly) -> "MSSQLSpatial" (read/write) -> "PostgreSQL" (read/write) -> "PCIDSK" (read/write) -> "OpenFileGDB" (readonly) -> "XPlane" (readonly) -> "AVCBin" (readonly) -> "AVCE00" (readonly) -> "DXF" (read/write) -> "Geoconcept" (read/write) -> "GeoRSS" (read/write) -> "GPSTrackMaker" (read/write) -> "VFK" (readonly) -> "PGDump" (read/write) -> "OSM" (readonly) -> "GPSBabel" (read/write) -> "SUA" (readonly) -> "OpenAir" (readonly) -> "PDS" (readonly) -> "WFS" (readonly) -> "HTF" (readonly) -> "AeronavFAA" (readonly) -> "Geomedia" (readonly) -> "EDIGEO" (readonly) -> "GFT" (read/write) -> "GME" (read/write) -> "SVG" (readonly) -> "CouchDB" (read/write) -> "Idrisi" (readonly) -> "ARCGEN" (readonly) -> "SEGUKOOA" (readonly) -> "SEGY" (readonly) -> "ODS" (read/write) -> "XLSX" (read/write) -> "ElasticSearch" (read/write) -> "PDF" (read/write) -> "Walk" (readonly) -> "CartoDB" (readonly) -> "SXF" (readonly)

serbinsh commented 9 years ago

The fix - install latest gcc compiler and open-mpi. Re-compile all libs with a consistent gcc/gfortran. Fix paths and modules. Now everything is running.

xros commented 9 years ago

how did you solve this? I met the same issue on ubuntu 14.04 after adding the deb sources to sources.list How did you make it?

robkooper commented 9 years ago

In the case of Ubuntu we use the official postgres distribution, see https://github.com/PecanProject/pecan/wiki/Installing-PEcAn-Ubuntu#install-postgres