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PeerHerholz / BIDSonym

a BIDS app for pseudo-anonymization of neuroimaging data
https://peerherholz.github.io/BIDSonym/
BSD 3-Clause "New" or "Revised" License
51 stars 12 forks source link

multimodal #14

Closed CPernet closed 4 years ago

CPernet commented 5 years ago

Summary

have option to deface other than T1w, eg. T2w

Script/Workflow details

(I do that with SPM from mrideface T1w)

generate mask (img - defaced) coreg T1w to img apply transform to mask apply mask img

PeerHerholz commented 5 years ago

Thx for bringing this up @CPernet! So far I used the lazy method, applying the same tools to T1w and e.g., T2w, but you're approach is of course way more appropriate. I'll include a small nipype workflow that conducts the processing steps you mentioned in cases where there's multimodal data.

PeerHerholz commented 4 years ago

A working (and build passing) function has been added here.

I'll close this issue for now, but in case there are problems/additions/etc. it can always be reopened.