search

PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
Other
41 stars 15 forks source link

Update smriprep requirement from ~=0.13.1 to ~=0.14.0 #393

Closed dependabot[bot] closed 8 months ago

dependabot[bot] commented 8 months ago

Updates the requirements on smriprep to permit the latest version.

Release notes

Sourced from smriprep's releases.

0.14.0

Release notes

New feature release in the 0.14.x series.

This release restores correct handling of cohort identifiers in templates. A feature release is warranted due to changes in the workflow structure.

Changes

Full Changelog: https://github.com/nipreps/smriprep/compare/0.13.2...0.14.0

Changelog

Sourced from smriprep's changelog.

0.14.0 (March 11, 2024)

New feature release in the 0.14.x series.

This release restores correct handling of cohort identifiers in templates. A feature release is warranted due to changes in the workflow structure.

  • FIX: Fetch templates during workflow construction (#418)
  • FIX: Re-add cohort identifier to template name (#416)
  • FIX: Repair FreeSurfer Dependency in Dockerfile (tcsh) (#404)
  • FIX: Invert result of skull-strip check in auto mode (#402)
  • STY: Adopt ruff for linting and formatting (#397)
  • CHORE: Update ruff, ignore certain rules (#419)

0.13.2 (December 08, 2023)

Bug fix release in the 0.13.x series.

This release fixes a check for skull-stripping in auto mode, and adds missing fsLR atlases to the Python package resources. The Docker image has also been updated to ensure FreeSurfer can be run from the sMRIPrep container.

With thanks to Patrick Sadil for reports and fixes.

  • ENH: Add 59k atlases (#405)
  • FIX: Repair FreeSurfer dependency in Dockerfile (tcsh) (#404)
  • FIX: Invert result of skull-strip check in auto mode (#402)

0.13.1 (November 21, 2023)

Bug fix release in the 0.13.x series.

This release fixes a bug with a workflow connection that was not properly named, and which would cause an error when T2-weighted images were provided.

  • FIX: T1w_preproc -> t1w_preproc (#399)

0.13.0 (November 20, 2023)

New feature release in the 0.13.x series.

This release adds support for MSM-Sulc, improving the alignment of subject surfaces to the fsLR template. This process is enabled by default, but may be disabled with the --no-msm flag.

The --fast-track flag has been deprecated in favor of a more flexible

... (truncated)

Commits
  • b82d14c rel(0.14.0): update changes [skip ci]
  • a2b76f9 CI: Sort expected outputs for consistency
  • 61757da CI: Bump cimg, simplify pyenv, reset cache
  • 035c342 chore(build): Sync Dockerfile to fmriprep
  • 61e55a8 chore(pin): echo "scipy<1.12" | uv pip compile --upgrade pyproject.toml -c - ...
  • ec61b58 Update pyproject requirements and env.yml
  • 5c4288e DOC: 0.14.0 changelog
  • cc52a47 Merge pull request #418 from mgxd/fix/sloppy-template-res
  • 9f13a86 Apply suggestions from code review
  • e351f9a RF: Move template fetching to iterator workflow, adhere to style
  • Additional commits viewable in compare view


Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)
tsalo commented 8 months ago

Failing because of nilearn update issues.

dependabot[bot] commented 8 months ago

Superseded by #395.