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PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
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Update sdcflows requirement from <=2.8.0 to <=2.8.1 #404

Closed dependabot[bot] closed 7 months ago

dependabot[bot] commented 7 months ago

Updates the requirements on sdcflows to permit the latest version.

Release notes

Sourced from sdcflows's releases.

2.8.1

DOI

Release notes

Bug-fix release in the 2.8.x series.

Fixes doc builds and CLI support for fieldmapless workflows. Introduces support for BIDS-URIs.

Changes

  • FIX: Enable fieldmapless by default in CLI (#426)
  • FIX: Pandoc requires Texlive to render LaTeX in notebook (#427)
  • FIX: New test test_wrangler_URIs had the wrong oracle (#425)
  • ENH: Resolve BIDS-URIs (#349)
  • TEST: Use less confusing function name for testing CLI with --dry-run (#424)
  • MNT: Bump actions/download-artifact from 3 to 4 (#418)
  • MNT: Bump actions/upload-artifact from 3 to 4 (#417)
  • CI: Move PR doc build into main doc build, add texlive to build dependencies (#428)

Full Changelog: https://github.com/nipreps/sdcflows/compare/2.8.0...2.8.1

Changelog

Sourced from sdcflows's changelog.

2.8.1 (January 22, 2024)

Bug-fix release in the 2.8.x series.

Fixes doc builds and CLI support for fieldmapless workflows. Introduces support for BIDS-URIs.

  • FIX: Enable fieldmapless by default in CLI (#426)
  • FIX: Pandoc requires Texlive to render LaTeX in notebook (#427)
  • FIX: New test test_wrangler_URIs had the wrong oracle (#425)
  • ENH: Resolve BIDS-URIs (#349)
  • TEST: Use less confusing function name for testing CLI with --dry-run (#424)
  • MNT: Bump actions/download-artifact from 3 to 4 (#418)
  • MNT: Bump actions/upload-artifact from 3 to 4 (#417)
  • CI: Move PR doc build into main doc build, add texlive to build dependencies (#428)

2.8.0 (January 10, 2024)

New feature release in the 2.8.x series.

This release fixes a bug in converting SyN-SDC displacements to fieldmaps, resulting in exaggerated corrections. As this makes changes to the structure of a workflow and the expected inputs of a workflow node, this release is considered a minor release.

  • FIX: Derive field from SyN displacements using EPI affine (#421)
  • FIX: Change os.basename to os.path.basename (#419)
  • DOC: Add @​smeisler to contributors (#420)

2.7.0 (December 18, 2023)

New feature release in the 2.7.0 series.

This release includes an updated CLI, which allows sdcflows to be run as a BIDS App. To achieve the previous behavior of sdcflows-find-estimators, use the -n flag.

Addtional bug fixes and enhancements are included.

  • FIX: Drop header before resampling image to avoid unsafe cast (#415)
  • FIX: Wrangler now ignores part-phase EPI files (#407)
  • ENH: Standalone CLI now estimates fieldmaps (#408)
  • ENH: Add support for ASL data (#411)
  • ENH: Enable rendering of the Jupyter notebooks (#409)
  • MNT: Migrate to PEP517/518 packaging (#410)
  • CI: bump actions/setup-python from 4 to 5 (#412)
  • CI: bump conda-incubator/setup-miniconda from 2 to 3 (#406)

2.6.0 (November 10, 2023)

... (truncated)

Commits
  • 8b8a302 REL: 2.8.1
  • a607eb5 TEST: Use less confusing function name for testing CLI with --dry-run (#424)
  • 048eac9 CI: Move PR doc build into main doc build, add texlive to build dependencies ...
  • 2cd1d45 FIX: Enable fieldmapless by default in CLI (#426)
  • 2db0774 Merge pull request #427 from nipreps/fix/broken-docs-build-2
  • b3c28a4 fix: nbsphinx dislikes output of templateflow.api.get
  • 4c939a7 fix: pandoc requires texlive to render latex in notebook
  • 6c5292c Merge pull request #425 from nipreps/fix/bids-uris-failing-test
  • 57449cb fix: new test test_wrangler_URIs had wrong oracle
  • 8ca5637 Merge pull request #349 from effigies/enh/bids-uris
  • Additional commits viewable in compare view


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codecov-commenter commented 7 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 79.60%. Comparing base (aeee1a2) to head (9a0cdc6).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #404 +/- ## ======================================= Coverage 79.60% 79.60% ======================================= Files 37 37 Lines 3986 3986 Branches 562 562 ======================================= Hits 3173 3173 Misses 630 630 Partials 183 183 ```

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