PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
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[ENH] Update docker image #409

Closed mattcieslak closed 6 months ago

mattcieslak commented 6 months ago

Updates aslprep_build to something in line with other current nipreps. This updates to

tsalo commented 6 months ago

I just don't get it:

./"codecov"  create-commit -t <redacted>
info - 2024-05-06 19:24:53,769 -- ci service found: circleci
warning - 2024-05-06 19:24:53,776 -- No config file could be found. Ignoring config.
info - 2024-05-06 19:24:53,915 -- Process Commit creating complete
error - 2024-05-06 19:24:53,916 -- Commit creating failed: {"detail":"Invalid token header. No credentials provided."}
./"codecov"  create-report -t <redacted>
info - 2024-05-06 19:24:54,826 -- ci service found: circleci
warning - 2024-05-06 19:24:54,832 -- No config file could be found. Ignoring config.
info - 2024-05-06 19:24:54,900 -- Process Report creating complete
error - 2024-05-06 19:24:54,900 -- Report creating failed: {"detail":"Invalid token header. No credentials provided."}
./codecov  do-upload -t <redacted> -n "18236"   -f /src/coverage/coverage.xml
info - 2024-05-06 19:24:55,777 -- ci service found: circleci
warning - 2024-05-06 19:24:55,783 -- No config file could be found. Ignoring config.
warning - 2024-05-06 19:24:55,790 -- xcrun is not installed or can't be found.
warning - 2024-05-06 19:24:55,790 -- gcov is not installed or can't be found.
warning - 2024-05-06 19:24:55,792 -- No coverage data found to transform
warning - 2024-05-06 19:24:55,802 -- Some files were not found --- {"not_found_files": ["/src/coverage/coverage.xml"]}
info - 2024-05-06 19:24:55,807 -- Found 0 coverage files to report
Error: No coverage reports found. Please make sure you're generating reports successfully.

Exited with code exit status 1
codecov-commenter commented 6 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 84.34%. Comparing base (5b37756) to head (4cc858d).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #409 +/- ## ========================================== + Coverage 79.60% 84.34% +4.74% ========================================== Files 37 37 Lines 3986 3986 Branches 562 0 -562 ========================================== + Hits 3173 3362 +189 + Misses 630 624 -6 + Partials 183 0 -183 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.

tsalo commented 6 months ago

@mattcieslak it looks like the old CodeCov orb still works, so I'll merge this once CI passes and I'll try running PNC through it ASAP. I have a separate PR for the CodeCov orb (#410).