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PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
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Update fmriprep requirement from <=24.0,>=23.2 to >=23.2,<=24.0.1 #428

Closed dependabot[bot] closed 4 months ago

dependabot[bot] commented 4 months ago

Updates the requirements on fmriprep to permit the latest version.

Release notes

Sourced from fmriprep's releases.

24.0.1 (July 16, 2024)

Release notes

Bug fix release in the 24.0.x series.

This release resolves a bug with multi-volume single-band references. If multiple volumes are found, they are processed in the same way as the BOLD series is processed to produce a motion-correction reference.

Changes

  • FIX: Validate and summarize multi-volume sbrefs (#3320)
  • DOC: Address errors/warnings in RTD builds (#3325)
  • DOC: Read html_baseurl from RTD environment, if available (#3324)
Changelog

Sourced from fmriprep's changelog.

24.0.1 (July 16, 2024)

Bug fix release in the 24.0.x series.

This release resolves a bug with multi-volume single-band references. If multiple volumes are found, they are processed in the same way as the BOLD series is processed to produce a motion-correction reference.

  • FIX: Validate and summarize multi-volume sbrefs (#3320)
  • DOC: Address errors/warnings in RTD builds (#3325)
  • DOC: Read html_baseurl from RTD environment, if available (#3324)

24.0.0 (June 17, 2024)

New feature release in the 24.0.x series.

This release is an incremental improvement on 23.2.x, with some fixes for bugs discovered in the updated workflow.

New features include separation of HTML reports by session for subjects with many BOLD runs, a new --fs-no-resume option to improve interoperability with less typical FreeSurfer directories, such as those generated by longitudinal FreeSurfer or FastSurfer, and adoption of DatasetLinks and BIDS-URIs, to follow the recommendations of recent versions of BIDS.

With thanks to Dimitri Papadopoulos, Basile Pinsard, Celine Provins, Taylor Salo and Wang Hao-Ting for their contributions!

  • FIX: Add "double" type to allowed DisplacementFieldTransform (#3287)
  • FIX: Require recent templateflow, select correct aparc dseg.tsv (#3256)
  • FIX: Ensure proper templates are retrieved with sloppy (#3251)
  • FIX: Delete summary from functional report when separated by sessions (#3223)
  • FIX: Support lists in bids filter file containing null or * (#3215)
  • FIX: Re-enable anat fasttrack for dataset without t1w (#3202)
  • ENH: Use BIDSURI in init_ds_boldmask_wf (#3297)
  • ENH: Add templateflow to DatasetLinks (#3267)
  • ENH: Track proximal sources of functional GIFTIs (#3263)
  • ENH: Support named derivative paths (#3264)
  • ENH: Track Sources for standard-space outputs (#3262)
  • ENH: Add --fs-no-resume option to reuse existing FreeSurfer outputs without resuming (#3142)
  • ENH: Use BIDS URIs to track Sources in sidecars (#3255)
  • ENH: Ignore unselected subjects in BIDSLayoutIndexer (#3236)
  • ENH: Add metadata for motion parameters (#3245)
  • ENH: Separate anatomical and functional reports per session for densely sampled dataset (#3191)
  • ENH: Leverage T2w if available for BOLD -> anat coregistration (#3208)
  • RF: Fix ITK warp conversion to nitransforms format (#3300)
  • RF: Load report assembler from nireports (#3177)
  • DOC: Clarify --dvars-spike-threshold uses standardized DVARS (#3205)
  • TST: Update test to reflect new report generation behavior (#3210)

... (truncated)

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codecov-commenter commented 4 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 84.34%. Comparing base (f183bb2) to head (ba1e8b7).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #428 +/- ## ======================================= Coverage 84.34% 84.34% ======================================= Files 37 37 Lines 3986 3986 ======================================= Hits 3362 3362 Misses 624 624 ```

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