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PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
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Update smriprep requirement from <=0.15 to <=0.16.0 #435

Closed dependabot[bot] closed 3 months ago

dependabot[bot] commented 3 months ago

Updates the requirements on smriprep to permit the latest version.

Changelog

Sourced from smriprep's changelog.

0.16.0 (July 31, 2024)

Start of the 0.16.x minor series.

This release decouples much of the hardcoded T1w behavior in favor of T1w/T2w options, to allow easier integration with tools less reliant on a single anatomical scan.

  • ENH: Use genericised "anat" input/output for TemplateDimensions (#443)
  • ENH: Remove much of the hardcoded T1w fields in favor of anat (#433)
  • RF: Load package data with acres (#448)
  • RF: space-fsaverage to sphere_reg output files (#446)
  • MNT: Unpin libitk 5.3 (ANTs 2.5.3 is built with 5.4) (#445)
  • MNT: Clean up doc builds, environment, style checks (#444)

0.15.0 (March 22, 2024)

New feature release in the 0.15.x series.

This release adds the workflow configuration option and CLI option to reuse existing FreeSurfer outputs without attempting to resume. This should allow for using longitudinal or non-standard pipelines (for example, FastSurfer) without additional tooling for each variant.

  • FIX: Patch version for smriprep-docker (#424)
  • FIX: Require recent templateflow, select correct aparc dseg.tsv (#420)
  • ENH: Add --fs-no-resume option to reuse existing FreeSurfer outputs without resuming (#393)
  • MNT: set copyright owner in LICENSE file (#426)
  • MNT: Apply Repo-Review suggestions (#422)
  • CI: Small cleanups to GHA (#423)

0.14.0 (March 11, 2024)

New feature release in the 0.14.x series.

This release restores correct handling of cohort identifiers in templates. A feature release is warranted due to changes in the workflow structure.

  • FIX: Fetch templates during workflow construction (#418)
  • FIX: Re-add cohort identifier to template name (#416)
  • FIX: Repair FreeSurfer Dependency in Dockerfile (tcsh) (#404)
  • FIX: Invert result of skull-strip check in auto mode (#402)
  • STY: Adopt ruff for linting and formatting (#397)
  • CHORE: Update ruff, ignore certain rules (#419)

0.13.2 (December 08, 2023)

Bug fix release in the 0.13.x series.

... (truncated)

Commits
  • 3f80312 maint: set niworkflows pin [skip ci]
  • ade513b rel(0.16.0): update changes [skip ci]
  • 46f4b81 maint: add script to populate changelog
  • 947fbc3 Merge pull request #448 from mgxd/rf/load
  • 1acab58 DOC: data load module
  • 7f4e0df RF: Load package data with acres
  • 519646d Merge pull request #443 from effigies/rf/anat-template-dimensions
  • 366df6e Merge pull request #446 from tsalo/fsaverage-reg-sphere
  • aa7a43e Update pyproject.toml
  • 5f8516f RF: Use genericised "anat" input/output for TemplateDimensions
  • Additional commits viewable in compare view


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codecov-commenter commented 3 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 84.34%. Comparing base (27fa054) to head (3138d70). Report is 1 commits behind head on main.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #435 +/- ## ======================================= Coverage 84.34% 84.34% ======================================= Files 37 37 Lines 3986 3986 ======================================= Hits 3362 3362 Misses 624 624 ```

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