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PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
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Update smriprep requirement from <=0.16.0 to <=0.16.1 #439

Closed dependabot[bot] closed 2 months ago

dependabot[bot] commented 2 months ago

Updates the requirements on smriprep to permit the latest version.

Release notes

Sourced from smriprep's releases.

0.16.1

Release Notes

A bug-fix release that reworks selection within the FreeSurfer to native segmentation resampling workflow.

Changelog

Changelog

Sourced from smriprep's changelog.

0.16.1 (August 26, 2024)

A bug-fix release that reworks selection within the FreeSurfer to native segmentation resampling workflow.

  • FIX: Select function in segmentation resampling workflow (#450)

0.16.0 (July 31, 2024)

Start of the 0.16.x minor series.

This release decouples much of the hardcoded T1w behavior in favor of T1w/T2w options, to allow easier integration with tools less reliant on a single anatomical scan.

  • ENH: Use genericised "anat" input/output for TemplateDimensions (#443)
  • ENH: Remove much of the hardcoded T1w fields in favor of anat (#433)
  • RF: Load package data with acres (#448)
  • RF: space-fsaverage to sphere_reg output files (#446)
  • MNT: Unpin libitk 5.3 (ANTs 2.5.3 is built with 5.4) (#445)
  • MNT: Clean up doc builds, environment, style checks (#444)

0.15.0 (March 22, 2024)

New feature release in the 0.15.x series.

This release adds the workflow configuration option and CLI option to reuse existing FreeSurfer outputs without attempting to resume. This should allow for using longitudinal or non-standard pipelines (for example, FastSurfer) without additional tooling for each variant.

  • FIX: Patch version for smriprep-docker (#424)
  • FIX: Require recent templateflow, select correct aparc dseg.tsv (#420)
  • ENH: Add --fs-no-resume option to reuse existing FreeSurfer outputs without resuming (#393)
  • MNT: set copyright owner in LICENSE file (#426)
  • MNT: Apply Repo-Review suggestions (#422)
  • CI: Small cleanups to GHA (#423)

0.14.0 (March 11, 2024)

New feature release in the 0.14.x series.

This release restores correct handling of cohort identifiers in templates. A feature release is warranted due to changes in the workflow structure.

  • FIX: Fetch templates during workflow construction (#418)
  • FIX: Re-add cohort identifier to template name (#416)
  • FIX: Repair FreeSurfer Dependency in Dockerfile (tcsh) (#404)

... (truncated)

Commits
  • 3442afe rel(0.16.1): update changes
  • 60f26d2 Merge pull request #450 from nipreps/fix/aparc-select
  • 4738420 TST: Fix test input
  • 530ce37 FIX: Output name
  • 0cfde86 TST: Add test for standalone function
  • f2ea08d RF: Move filtering into standalone custom function
  • 477f17c FIX: Select function in segmentation resampling workflow
  • f368a28 Merge tag '0.16.0'
  • 3f80312 maint: set niworkflows pin [skip ci]
  • ade513b rel(0.16.0): update changes [skip ci]
  • Additional commits viewable in compare view


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codecov-commenter commented 2 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 84.34%. Comparing base (77c302f) to head (a511093).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #439 +/- ## ======================================= Coverage 84.34% 84.34% ======================================= Files 37 37 Lines 3986 3986 ======================================= Hits 3362 3362 Misses 624 624 ```

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