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Planteome
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planteome-annotation-data
This is a place to discuss issues around the Planteome annotation data and store useful scripts etc.
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Links to GR Ensembl are not resolving correctly
#38
cooperl09
opened
9 months ago
0
Links out to Legume Information System are not resolving correctly
#37
cooperl09
opened
9 months ago
0
Links to RAP-DB broken
#36
cooperl09
closed
2 days ago
2
Links to Genesys from Cassava germplasm with TO annotations do not resolve, many missing
#35
cooperl09
closed
10 months ago
1
Links to Gramene QTLs and references are broken
#34
cooperl09
closed
10 months ago
1
Prunus persica links are broken
#33
cooperl09
opened
11 months ago
2
683 TAIR genes missing object type
#32
cooperl09
closed
3 months ago
1
Links to Congenie do not resolve
#31
cooperl09
opened
12 months ago
1
Comma-separated synonym fields in GO GAF file
#30
serenalotreck
closed
2 years ago
5
Download most recent version of all .assoc files in bulk
#29
serenalotreck
closed
2 years ago
2
Systemic issue in GAF file formatting
#28
serenalotreck
closed
2 years ago
13
Error in to_germplasm_O.sativa_IRRI3K.assoc file
#27
cooperl09
opened
3 years ago
0
Links to germplasm from GRIMS do not resolve
#26
cooperl09
closed
7 months ago
1
Links to the germplasm sources from to_germplasm_O.sativa_IRRI3K.assoc do not resolve
#25
cooperl09
opened
3 years ago
0
File "go_gene_Oryza_Gramene.assoc" also contains Sorghum and Zea mays genes
#24
cooperl09
opened
3 years ago
0
Links fail to resolve from Oryza sativa Japonica Group annotations
#23
cooperl09
opened
3 years ago
0
Links fail to resolve from Populus trichocarpa annotations
#22
cooperl09
opened
3 years ago
0
Links fail to resolve from Oryza sativa Indica Group annotations
#21
cooperl09
opened
3 years ago
0
Links to TAIR PPPP genes are the wrong format
#20
cooperl09
opened
4 years ago
0
Links to Oyza germplasm at GRIMS now go to blank page at Genesys
#19
cooperl09
opened
4 years ago
0
New gene atlas for maize is available
#18
cooperl09
opened
5 years ago
0
Ensemblplants xrefs no longer work
#17
elserj
opened
5 years ago
0
Physcomitrella Annotations from Cosmoss
#16
cooperl09
opened
5 years ago
0
sorghum QTL Mappings
#15
cooperl09
closed
5 years ago
2
Issues with sorghum_GRIN.gaf file
#14
cooperl09
closed
5 years ago
1
Missing species name- Zea diploperennis
#13
cooperl09
closed
6 years ago
1
Links to IRIS database not working in germplasm annotations
#12
cooperl09
closed
6 years ago
2
lentil germplasm traits mapping
#11
cooperl09
closed
6 years ago
2
4 Reference xref sources don't have URLs
#10
elserj
opened
6 years ago
3
po_anatomy_germplasm_Zea_MaizeGDB.assoc abusing with/from field?
#9
elserj
opened
6 years ago
0
Triticum monococcum go annotation files- need to clarify the Taxon ids
#8
cooperl09
opened
7 years ago
0
rename files for consistency: go_iprscan_Mimulus_guttatus.assoc and go_ortholog_gene_Mimulus_guttatus_planteome.assoc?
#7
cooperl09
closed
5 years ago
1
Formats of the association files in our database- not all are GAF 2.0
#6
cooperl09
closed
6 years ago
2
Transcriptomics of cereal-Fusarium graminearum interactions
#5
cooperl09
opened
7 years ago
2
Phenotypic differences in Physcomitrella patens ecotypes- expression profiling and comparative developmental data for several stages of sporophyte development
#4
cooperl09
opened
7 years ago
0
Empty Ref fields in go-associations/go_gene_Oryza_Gramene.assoc
#3
cooperl09
opened
7 years ago
0
Obsolete GO terms in annotation files
#2
cooperl09
opened
7 years ago
5
MaizeGDB GO annotations for Jan 2017 Release
#1
austinmeier
closed
7 years ago
9