Error in get_lp_data(maf = m1, geneID = gene, AACol = AACol1, refSeqID = refSeqID, : Structure for protein BAGE3 not found.

PoisonAlien / maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

http://bioconductor.org/packages/release/bioc/html/maftools.html

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Error in get_lp_data(maf = m1, geneID = gene, AACol = AACol1, refSeqID = refSeqID, : Structure for protein BAGE3 not found. #1033

Open libiqing77 opened 2 weeks ago

libiqing77 commented 2 weeks ago

Hi guys,

when I used lollipopPlot2 to plot figure for BAGE3 gene, I got the following error. Gene: BAGE3 Error in get_lp_data(maf = m1, geneID = gene, AACol = AACol1, refSeqID = refSeqID, : Structure for protein BAGE3 not found.

Could you help update the database. Thanks.

PoisonAlien commented 2 weeks ago

Hi,

Thanks for the issue. Unfortunately, this gene seems to have no transcripts or protein structures available. Unirot says its a 109 aa length protein with no domains. Please confirm or point me to the structure example (from any publication), I am happy to include it.