Open bruvellu opened 4 years ago
Hi, I'm trying to get the multiview deconvolution to work on the GPU but I'm running into an error. What I did:
~/installed-cuda/lib/*
~/Fiji/lib/linux64
FourierConvolutionCUDALib.so
Mon Nov 02 15:07:39 CET 2020: Computing maximal PSF size ... Mon Nov 02 15:07:39 CET 2020: Maximal transformed PSF size = (264, 23, 263) Looking for native libraries ending with '.so', '.lib' in directory: '/mnt/projects/cosserme/src/Fiji.app/lib/linux64' ... Trying to load following library: /mnt/projects/cosserme/src/Fiji.app/lib/linux64/libFourierConvolutionCUDALib.so Cannot load JNA library: java.lang.UnsatisfiedLinkError: Unable to load library '/mnt/projects/cosserme/src/Fiji.app/lib/linux64/libFourierConvolutionCUDALib.so': Native library (mnt/projects/cosserme/src/Fiji.app/lib/linux64/libFourierConvolutionCUDALib.so) not found in resource path ([file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-launcher-5.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jffi-1.2.19-native.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/parsington-2.0.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/fiji-lib-2.1.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/stax-ex-1.8.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jdatepicker-1.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/minlog-1.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scijava-table-0.6.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/minimaven-2.2.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/xalan-2.7.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-tensorflow-1.1.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/blas-0.8.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jackson-core-2.11.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/FilamentDetector-1.0.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/antlr-3.5.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/grDevices-0.8.1906.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jnr-netdb-1.1.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imglib2-ij-2.0.0-beta-46.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/xmlgraphics-commons-2.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/gax-1.56.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bridj-0.7.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/mastodon-selection-creator-0.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jgoodies-forms-1.7.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scala-library-2.12.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/c3p0-0.9.5.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/asm-commons-7.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/denoiseg-0.5.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/batik-svggen-1.13.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/object-inspector-0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/VectorString-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/cdm-4.6.13.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/eventbus-1.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/lapack-0.8.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/itextpdf-5.5.13.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/groovy-swing-3.0.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/google-http-client-appengine-1.34.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/commons-math3-3.6.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/clojure-1.8.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/renjin-core-0.8.1906.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/ui-behaviour-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/utils-0.8.1906.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jcommon-1.0.24.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/batik-constants-1.13.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jnr-posix-3.0.50.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/netty-common-4.1.45.Final.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/trackmate-1.0.0-beta-13.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jply-0.2.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/commons-io-2.7.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/gson-2.8.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jama-1.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jzlib-1.1.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/objenesis-2.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/swing-checkbox-tree-1.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/j2objc-annotations-1.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/commons-beanutils-1.9.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/joml-1.9.25.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/trakem2-transform-1.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/google-auth-library-oauth2-http-0.20.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/groovy-json-3.0.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/stats-0.8.1906.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/asm-7.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jcommander-1.48.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/asm-util-7.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/httpclient-4.5.12.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/aws-java-sdk-kms-1.11.796.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/args4j-2.0.25.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jfilechooser-bookmarks-0.1.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/metadata-extractor-2.11.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/mastodon-graph-1.0.0-beta-16.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jcodings-1.0.44.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jogl-all-2.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imglib2-ui-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/txw2-2.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/autocomplete-3.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scifio-ome-xml-0.16.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/invokebinder-1.10.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-mesh-0.8.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jblosc-1.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/trove4j-3.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/clij-bigviewer_-0.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jython-slim-2.7.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/batik-parser-1.13.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/joal-2.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/tensorflow-1.15.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/java-sizeof-0.0.5.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/postgresql-42.2.12.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-2.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/mines-jtk-20151125.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/plexus-utils-1.5.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/groovy-dateutil-3.0.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/f2jutil-0.8.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/joal-main-2.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/script-editor-0.5.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/libtensorflow-1.15.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jaxb-runtime-2.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bij-1.0.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/alphanumeric-comparator-1.4.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jnr-unixsocket-0.17.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scijava-ui-awt-0.1.7.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/mastodon-tracking-1.0.0-beta-5.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/miglayout-swing-5.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scijava-plugins-io-table-0.3.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/xerbla-0.8.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jhdf5-14.12.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jna-4.5.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/proto-google-common-protos-1.17.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/mapdb-0.0.0-STUB.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bytelist-1.0.15.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/netty-buffer-4.1.45.Final.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/threetenbp-1.4.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/nailgun-server-0.9.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/netty-codec-4.1.45.Final.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/n5-imglib2-3.5.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/fiji-2.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scripting-clojure-0.1.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-scripting-0.8.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/slf4j-api-1.7.30.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/ffmpeg-platform-4.1-1.4.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/icu4j-59.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scripting-beanshell-0.3.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scijava-io-http-0.2.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/failureaccess-1.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jackson-jq-1.0.0-preview.20191208.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/rsyntaxtextarea-3.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scijava-search-0.7.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/renjin-appl-0.8.1906.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/google-cloud-core-http-1.93.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-common-0.33.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imglib2-algorithm-gpl-0.2.5.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/commons-collections-3.2.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/rhino-1.7.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jmespath-java-1.11.796.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/gluegen-rt-main-2.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/caffeine-2.4.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jnr-enxio-0.16.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/nativelibs4java-utils-1.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-legacy-0.37.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/mpicbg-1.4.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/commons-vfs2-2.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/ij-1.53c.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jackson-databind-2.11.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/kryo-2.24.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/maven-scm-provider-svn-commons-1.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scripting-java-0.4.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scifio-cli-0.6.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/T2-TreelineGraph-1.1.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jheaps-0.11.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jpedalSTD-2.80b11.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jline-2.14.5.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/gax-httpjson-0.71.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jogl-all-main-2.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/okio-2.6.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/snakeyaml-1.26.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/filters-2.0.235.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/okhttp-4.7.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/javax.annotation-api-1.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/native-lib-loader-2.3.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/google-http-client-xml-1.20.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/vecmath-1.6.0-scijava-2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jsr166y-1.7.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scripting-jruby-0.3.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/xml-apis-ext-1.3.04.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scijava-ui-swing-0.13.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/Kappa-2.0.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/commons-text-1.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/ion-java-1.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/google-cloud-core-1.93.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/ij1-patcher-1.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imglib2-label-multisets-0.9.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/clij-clearcl-2.0.0.21.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/groovy-templates-3.0.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/batik-script-1.13.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scripting-renjin-0.2.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/aws-java-sdk-core-1.11.796.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jhotdraw-7.6.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scijava-config-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jclipboardhelper-0.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/linux64/jogl-all-2.3.2-natives-linux-amd64.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/linux64/joal-2.3.2-natives-linux-amd64.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/linux64/ffmpeg-4.1-1.4.4-linux-x86_64.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/linux64/jocl-2.3.2-natives-linux-amd64.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/linux64/gluegen-rt-2.3.2-natives-linux-amd64.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/batik-xml-1.13.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scala-xml_2.12-1.0.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/multiverse-core-0.7.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/proto-1.15.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jakarta.xml.bind-api-2.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/google-api-services-storage-v1-rev20200326-1.30.9.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-plugins-tools-0.3.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/xercesImpl-2.8.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/log4j-1.2.17.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scripting-scala-0.2.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jfreesvg-3.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/google-http-client-jackson2-1.35.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/perf4j-0.9.16.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-deprecated-0.1.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/xchart-3.5.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-mesh-io-0.1.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/batik-gvt-1.13.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bcpkix-jdk15on-1.62.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/asm-tree-7.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/gcc-runtime-0.8.1906.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jakarta.activation-api-1.2.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-ops-0.45.7.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-plugins-batch-0.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/mastodon-collection-1.0.0-beta-17.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/n2v-0.7.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/groovy-xml-3.0.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/auto-value-annotations-1.7.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/mastodon-tomancak-0.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/commons-lang-2.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jsr305-3.0.2.jar, 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file:/mnt/projects/cosserme/src/Fiji.app/jars/bio-formats/jxrlib-all-0.2.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bio-formats/jai_imageio-0.0.0-STUB.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bio-formats/formats-api-6.5.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bio-formats/ome-mdbtools-5.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bio-formats/metakit-5.3.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bio-formats/formats-bsd-6.5.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bio-formats/ome-codecs-0.3.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bio-formats/ome-common-6.0.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/bio-formats/turbojpeg-6.5.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/gentyref-1.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jgraphx-4.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/netty-resolver-4.1.45.Final.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imagej-modelzoo-0.8.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/imglib2-realtransform-3.0.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/jruby-stdlib-9.1.17.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/methods-0.8.1906.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scijava-plugins-platforms-0.3.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/FastInfoset-1.2.16.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/csbdeep-0.6.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/scifio-jai-imageio-1.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/libtensorflow_jni-1.15.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/j3dutils-1.6.0-scijava-2.jar, file:/mnt/projects/cosserme/src/Fiji.app/jars/regexp-1.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/AnalyzeSkeleton_-3.4.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Manual_Tracking-2.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Auto_Threshold-1.17.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Directionality_-2.3.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/blockmatching_-2.1.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/bUnwarpJ_-2.6.13.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/n5-viewer_fiji-4.0.1-SNAPSHOT.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/VIB_-3.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/mpicbg_-1.4.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Graph_Cut-1.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/3D_Objects_Counter-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Image_5D-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Descriptor_based_registration-3.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/quality_estimation-0.2.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/TrackMate_-6.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Thread_Killer-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/CPU_Meter-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/clij_-1.7.5.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Fiji_Developer-2.0.7.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Stitching_-3.1.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/bio-formats_plugins-6.5.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/clijx-weka_-0.30.0.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Big_Stitcher-0.6.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Auto_Local_Threshold-1.10.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/multiview_reconstruction-0.8.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/bigwarp_fiji-6.0.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Statistical_Region_Merging-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Sync_Win-1.7-fiji4.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/level_sets-1.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/BalloonSegmentation_-3.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/SplineDeformationGenerator_-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/clij2-fft_-2.1.3.1-BETA.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Volume_Viewer-2.01.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Interactive_3D_Surface_Plot-3.0.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Color_Inspector_3D-2.5.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/IO_-4.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Stack_Manipulation-2.1.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Colour_Deconvolution-3.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Calculator_Plus-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Linear_Kuwahara-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/clij_custom_convolution_plugin-1.7.0.10.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/3D_Animation_IJ3DViewer-0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Simple_Neurite_Tracer-3.1.8.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/IsoData_Classifier-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Samples_-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Time_Lapse-2.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/StarDist_-0.3.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Bug_Submitter-2.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/M_I_P-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/3D_Animation-0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/FlowJ_-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/LSM_Toolbox-4.1.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Series_Labeler-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/FS_Align_TrakEM2-2.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/ToAST_-25.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/LSM_Reader-4.1.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Cell_Counter-3.0.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/3D_Blob_Segmentation-3.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/MTrack2_-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/TrakEM2_Archipelago-2.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Archipelago_Plugins-0.5.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Colocalisation_Analysis-3.0.5.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/registration_3d-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/TrakEM2_-1.3.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/QuickPALM_-1.1.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/3D_Animation_Language-0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/IJ_Robot-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Sholl_Analysis-4.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/bigdataviewer_fiji-6.2.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Color_Histogram-2.0.7.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Anisotropic_Diffusion_2D-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Vaa3d_Writer-1.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/3D_Viewer-4.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Multi_Kymograph-3.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/3D_Animation_BDV-0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/trakem2_tps-1.1.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Arrow_-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Dichromacy_-2.1.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/HDF5_Vibez-1.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Skeletonize3D_-2.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/RATS_-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/SPIM_Registration-0.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Kuwahara_Filter-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/panorama_-3.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/3D_Animation_Example_Extension-0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Volume_Calculator-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/H5J_Loader_Plugin-1.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/z_spacing-1.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Gray_Morphology-2.3.5.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Helmholtz_Analysis-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Video_Editing-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/SPIM_Opener-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/PIV_analyser-1.1.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/clij2_-2.2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/register_virtual_stack_slices-3.0.5.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Feature_Detection-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/3D_Animation_Povray-0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/clijx_-0.30.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Trainable_Segmentation-3.2.34.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Fiji_Package_Maker-2.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Vaa3d_Reader-2.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/TopoJ_-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Time_Stamper-2.1.0.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/CorrectBleach_-2.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Fiji_Archipelago-2.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Lasso_and_Blow_Tool-2.0.2.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Siox_Segmentation-1.0.5.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Fiji_Plugins-3.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Reconstruct_Reader-2.0.4.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/KymographBuilder-2.1.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Correct_3D_Drift-1.0.6.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/Image_Expression_Parser-3.0.1.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/LocalThickness_-4.0.3.jar, file:/mnt/projects/cosserme/src/Fiji.app/plugins/View5D_-2.3.1.jar]) Cannot load CUDA JNA library.
This is a linux workstation with a GeForce GTX TITAN X. It's probably something related to my setup, any ideas what can be wrong?
Thanks!
Hi, I'm trying to get the multiview deconvolution to work on the GPU but I'm running into an error. What I did:
~/installed-cuda/lib/*files to~/Fiji/lib/linux64.~/Fiji/lib/linux64and selected theFourierConvolutionCUDALib.so.This is a linux workstation with a GeForce GTX TITAN X. It's probably something related to my setup, any ideas what can be wrong?
Thanks!